/* * Copyright (C) 2011 SeqWare * * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. */ package net.sourceforge.seqware.webservice.resources.filters; import java.util.ArrayList; import java.util.Collection; import java.util.Map; import java.util.SortedSet; import net.sf.beanlib.hibernate3.Hibernate3DtoCopier; import net.sourceforge.seqware.common.business.StudyService; import net.sourceforge.seqware.common.factory.BeanFactory; import net.sourceforge.seqware.common.model.Experiment; import net.sourceforge.seqware.common.model.Study; import net.sourceforge.seqware.common.model.lists.ExperimentList; import net.sourceforge.seqware.common.util.xmltools.JaxbObject; import net.sourceforge.seqware.common.util.xmltools.XmlTools; import net.sourceforge.seqware.webservice.resources.BasicResource; import org.restlet.data.Status; import org.restlet.resource.Get; import org.restlet.resource.ResourceException; import org.w3c.dom.Document; /** * <p> * ExperimentIDFilter class. * </p> * * @author mtaschuk * @version $Id: $Id */ public class ExperimentIDFilter extends BasicResource { /** * <p> * getXml. * </p> */ @Get public void getXml() { // String path = getRequest().getResourceRef().getPath();getAttribute(); Collection<Experiment> experiments = null; Map<String, Object> requestAttributes = getRequestAttributes(); if (requestAttributes.containsKey("studyId")) { Object val = requestAttributes.get("studyId"); if (val != null) { StudyService ss = BeanFactory.getStudyServiceBean(); Study s = (Study) testIfNull(ss.findBySWAccession(parseClientInt(val.toString()))); experiments = (SortedSet<Experiment>) testIfNull(s.getExperiments()); } } else { StringBuilder sb = new StringBuilder(); for (String key : requestAttributes.keySet()) { sb.append(key); } throw new ResourceException(Status.CLIENT_ERROR_BAD_REQUEST, "This resource cannot handle these data types: " + sb.toString()); } if (experiments.isEmpty()) { throw new ResourceException(Status.CLIENT_ERROR_NOT_FOUND, "There are no experiments for this resource"); } Hibernate3DtoCopier copier = new Hibernate3DtoCopier(); JaxbObject<ExperimentList> jaxbTool = new JaxbObject<>(); ExperimentList eList = new ExperimentList(); eList.setList(new ArrayList()); for (Experiment experiment : experiments) { Experiment dto = copier.hibernate2dto(Experiment.class, experiment); eList.add(dto); } Document line = XmlTools.marshalToDocument(jaxbTool, eList); getResponse().setEntity(XmlTools.getRepresentation(line)); } }