/*
* Copyright (C) 2013 SeqWare
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
package net.sourceforge.seqware.pipeline.plugins;
import java.io.File;
import java.io.IOException;
import java.nio.charset.Charset;
import org.junit.Assert;
import net.sourceforge.seqware.common.module.ReturnValue;
import net.sourceforge.seqware.common.util.Log;
import org.apache.commons.io.FileUtils;
import org.junit.BeforeClass;
import org.junit.Test;
/**
* These tests support the database check utility.
*
* @author dyuen
*/
public class DatabaseCheckET {
@BeforeClass
public static void resetDatabase() {
ExtendedTestDatabaseCreator.resetDatabaseWithUsers();
}
@Test
public void runDatabaseCheck() throws IOException {
String listCommand = "-p net.sourceforge.seqware.pipeline.plugins.checkdb.CheckDB";
String listOutput = ITUtility.runSeqWareJar(listCommand, ReturnValue.SUCCESS, null);
Log.info(listOutput);
String[] split = listOutput.split("Printed report to ");
File report = new File(split[split.length - 1].trim());
String readFileToString = FileUtils.readFileToString(report, (Charset) null);
Assert.assertTrue("report empty", readFileToString.length() > 0);
Assert.assertTrue("report does not contain report", readFileToString.contains("CheckDB Report"));
Assert.assertTrue("report contains exceptions", !readFileToString.contains("Exception"));
FileUtils.deleteQuietly(report);
}
}