SequencerRunService.java

package net.sourceforge.seqware.common.business;

import java.util.List;
import net.sourceforge.seqware.common.dao.SequencerRunDAO;
import net.sourceforge.seqware.common.model.Registration;
import net.sourceforge.seqware.common.model.SequencerRun;
import net.sourceforge.seqware.common.model.SequencerRunWizardDTO;

/**
 * <p>
 * SequencerRunService interface.
 * </p>
 * 
 * @author boconnor
 * @version $Id: $Id
 */
public interface SequencerRunService {

    /** Constant <code>NAME="SequencerRunService"</code> */
    public static final String NAME = "SequencerRunService";

    /**
     * <p>
     * setSequencerRunDAO.
     * </p>
     * 
     * @param sequencerRunDAO
     *            a {@link net.sourceforge.seqware.common.dao.SequencerRunDAO} object.
     */
    public void setSequencerRunDAO(SequencerRunDAO sequencerRunDAO);

    /**
     * <p>
     * insert.
     * </p>
     * 
     * @param sequencerRun
     *            a {@link net.sourceforge.seqware.common.model.SequencerRun} object.
     * @return
     */
    public Integer insert(SequencerRun sequencerRun);

    /**
     * <p>
     * insert.
     * </p>
     * 
     * @param registration
     *            a {@link net.sourceforge.seqware.common.model.Registration} object.
     * @param sequencerRun
     *            a {@link net.sourceforge.seqware.common.model.SequencerRun} object.
     * @return
     */
    public Integer insert(Registration registration, SequencerRun sequencerRun);

    /**
     * <p>
     * insert.
     * </p>
     * 
     * @param sequencerRun
     *            a {@link net.sourceforge.seqware.common.model.SequencerRunWizardDTO} object.
     * @return
     */
    public Integer insert(SequencerRunWizardDTO sequencerRun);

    /**
     * <p>
     * insert.
     * </p>
     * 
     * @param registration
     *            a {@link net.sourceforge.seqware.common.model.Registration} object.
     * @param sequencerRun
     *            a {@link net.sourceforge.seqware.common.model.SequencerRunWizardDTO} object.
     * @return
     */
    public Integer insert(Registration registration, SequencerRunWizardDTO sequencerRun);

    /**
     * <p>
     * update.
     * </p>
     * 
     * @param sequencerRun
     *            a {@link net.sourceforge.seqware.common.model.SequencerRun} object.
     */
    public void update(SequencerRun sequencerRun);

    /**
     * <p>
     * update.
     * </p>
     * 
     * @param registration
     *            a {@link net.sourceforge.seqware.common.model.Registration} object.
     * @param sequencerRun
     *            a {@link net.sourceforge.seqware.common.model.SequencerRun} object.
     */
    public void update(Registration registration, SequencerRun sequencerRun);

    /**
     * <p>
     * delete.
     * </p>
     * 
     * @param sequencerRun
     *            a {@link net.sourceforge.seqware.common.model.SequencerRun} object.
     */
    public void delete(SequencerRun sequencerRun);

    /**
     * <p>
     * list.
     * </p>
     * 
     * @return a {@link java.util.List} object.
     */
    public List<SequencerRun> list();

    /**
     * <p>
     * list.
     * </p>
     * 
     * @param registration
     *            a {@link net.sourceforge.seqware.common.model.Registration} object.
     * @return a {@link java.util.List} object.
     */
    public List<SequencerRun> list(Registration registration);

    /**
     * <p>
     * list.
     * </p>
     * 
     * @param registration
     *            a {@link net.sourceforge.seqware.common.model.Registration} object.
     * @param isAsc
     *            a {@link java.lang.Boolean} object.
     * @return a {@link java.util.List} object.
     */
    public List<SequencerRun> list(Registration registration, Boolean isAsc);

    /**
     * <p>
     * findByName.
     * </p>
     * 
     * @param name
     *            a {@link java.lang.String} object.
     * @return a {@link net.sourceforge.seqware.common.model.SequencerRun} object.
     */
    public SequencerRun findByName(String name);

    /**
     * <p>
     * findByID.
     * </p>
     * 
     * @param expID
     *            a {@link java.lang.Integer} object.
     * @return a {@link net.sourceforge.seqware.common.model.SequencerRun} object.
     */
    public SequencerRun findByID(Integer expID);

    /**
     * <p>
     * findBySWAccession.
     * </p>
     * 
     * @param swAccession
     *            a {@link java.lang.Integer} object.
     * @return a {@link net.sourceforge.seqware.common.model.SequencerRun} object.
     */
    public SequencerRun findBySWAccession(Integer swAccession);

    /**
     * <p>
     * findByOwnerID.
     * </p>
     * 
     * @param registrationId
     *            a {@link java.lang.Integer} object.
     * @return a {@link java.util.List} object.
     */
    public List<SequencerRun> findByOwnerID(Integer registrationId);

    /**
     * <p>
     * hasNameBeenUsed.
     * </p>
     * 
     * @param oldName
     *            a {@link java.lang.String} object.
     * @param newName
     *            a {@link java.lang.String} object.
     * @return a boolean.
     */
    public boolean hasNameBeenUsed(String oldName, String newName);

    /**
     * <p>
     * setProcCountInfo.
     * </p>
     * 
     * @param list
     *            a {@link java.util.List} object.
     * @return a {@link java.util.List} object.
     */
    public List<SequencerRun> setProcCountInfo(List<SequencerRun> list);

    /**
     * <p>
     * updateDetached.
     * </p>
     * 
     * @param sequencerRun
     *            a {@link net.sourceforge.seqware.common.model.SequencerRun} object.
     * @return a {@link net.sourceforge.seqware.common.model.SequencerRun} object.
     */
    public SequencerRun updateDetached(SequencerRun sequencerRun);

    /**
     * <p>
     * updateDetached.
     * </p>
     * 
     * @param registration
     *            a {@link net.sourceforge.seqware.common.model.Registration} object.
     * @param sequencerRun
     *            a {@link net.sourceforge.seqware.common.model.SequencerRun} object.
     * @return a {@link net.sourceforge.seqware.common.model.SequencerRun} object.
     */
    public SequencerRun updateDetached(Registration registration, SequencerRun sequencerRun);

    /**
     * <p>
     * findByCriteria.
     * </p>
     * 
     * @param criteria
     *            a {@link java.lang.String} object.
     * @param isCaseSens
     *            a boolean.
     * @return a {@link java.util.List} object.
     */
    public List<SequencerRun> findByCriteria(String criteria, boolean isCaseSens);
}

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