package net.sourceforge.seqware.pipeline.workflowV2.model;

import java.util.ArrayList;
import java.util.Collection;
import java.util.List;

public class Workflow {

    private String workflowBundleDir;

    private Collection<String> tests;
    // may be better to use Map
    private List<AbstractJob> jobs;

    public Workflow() {
        this.jobs = new ArrayList<>();
        this.tests = new ArrayList<>();
    }

    /**
     * get all jobs in current workflow
     * 
     * @return
     */
    public List<AbstractJob> getJobs() {
        return jobs;
    }

    /**
     * add job to the workflow
     * 
     * @param job
     */
    public void addJobs(AbstractJob job) {
        this.jobs.add(job);
    }

    /**
     * 
     * @return the workflowbundle diretory
     */
    public String getWorkflowBundleDir() {
        return workflowBundleDir;
    }

    /**
     * set the workflowBundle directory
     * 
     * @param workflowBundleDir
     */
    public void setWorkflowBundleDir(String workflowBundleDir) {
        this.workflowBundleDir = workflowBundleDir;
    }

    public Job createJavaSeqwareModuleJob(String algo, String cp, String module) {
        AbstractJob job = new JavaSeqwareModuleJob(algo, cp, module);
        this.jobs.add(job);
        return job;
    }

    public Job createJavaJob(String algo, String cp, String mainclass) {
        AbstractJob job = new JavaJob(algo, cp, mainclass);
        this.jobs.add(job);
        return job;
    }

    public Job createBashJob(String algo) {
        AbstractJob job = new BashJob(algo);
        this.jobs.add(job);
        return job;
    }

    public JobBatch createJobBatch(String algo) {
        JobBatch job = new JobBatch(algo);
        this.jobs.add(job);
        return job;
    }

    public Job createPerlJob(String algo, String script) {
        AbstractJob job = new PerlJob(algo, "", script);
        this.jobs.add(job);
        return job;
    }

    /**
     * add a test command for the workflow
     * 
     * @param value
     */
    public void addTest(String value) {
        this.tests.add(value);
    }

    /**
     * @return all test commands
     */
    public Collection<String> getTests() {
        return this.tests;
    }

}