/* * Copyright (C) 2012 SeqWare * * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. */ package net.sourceforge.seqware.webservice.resources.queries; import java.sql.SQLException; import java.util.ArrayList; import java.util.Comparator; import java.util.List; import java.util.SortedSet; import java.util.TreeSet; import net.sf.beanlib.hibernate3.Hibernate3DtoCopier; import net.sourceforge.seqware.common.business.WorkflowRunService; import net.sourceforge.seqware.common.factory.BeanFactory; import net.sourceforge.seqware.common.model.Processing; import net.sourceforge.seqware.common.model.WorkflowRun; import net.sourceforge.seqware.common.model.lists.ProcessingList; import net.sourceforge.seqware.common.util.xmltools.JaxbObject; import net.sourceforge.seqware.common.util.xmltools.XmlTools; import static net.sourceforge.seqware.webservice.resources.BasicResource.parseClientInt; import static net.sourceforge.seqware.webservice.resources.BasicResource.testIfNull; import net.sourceforge.seqware.webservice.resources.BasicRestlet; import org.restlet.Context; import org.restlet.Request; import org.restlet.Response; import org.restlet.data.Status; import org.w3c.dom.Document; /** * <p> * WorkflowRunIDProcessingsResource class. * </p> * * @author mtaschuk * @version $Id: $Id */ public class WorkflowRunIDProcessingsResource extends BasicRestlet { /** * <p> * Constructor for WorkflowRunIDProcessingsResource. * </p> * * @param context * a {@link org.restlet.Context} object. */ public WorkflowRunIDProcessingsResource(Context context) { super(context); } /** {@inheritDoc} */ @Override public void handle(Request request, Response response) { authenticate(request.getChallengeResponse().getIdentifier()); try { String id = request.getAttributes().get("workflowRunId").toString(); List<Processing> procs = collectProcessingList(parseClientInt(id)); ProcessingList list = new ProcessingList(); list.setList(procs); JaxbObject<ProcessingList> jaxbTool = new JaxbObject<>(); Document doc = XmlTools.marshalToDocument(jaxbTool, list); response.setEntity(XmlTools.getRepresentation(doc)); } catch (SQLException ex) { ex.printStackTrace(); response.setStatus(Status.SERVER_ERROR_INTERNAL, ex); } } /** * <p> * collectProcessingList. * </p> * * @param wrSWA * a int. * @return a {@link java.util.List} object. * @throws java.sql.SQLException * if any. */ public List<Processing> collectProcessingList(int wrSWA) throws SQLException { WorkflowRunService wrs = BeanFactory.getWorkflowRunServiceBean(); WorkflowRun run = (WorkflowRun) testIfNull(wrs.findBySWAccession(wrSWA)); SortedSet<Processing> procs = new TreeSet<>(new Comparator<Processing>() { @Override public int compare(Processing t, Processing t1) { return t.getCreateTimestamp().compareTo(t1.getCreateTimestamp()); } }); if (run.getProcessings() != null) procs.addAll(run.getProcessings()); if (run.getOffspringProcessings() != null) procs.addAll(run.getOffspringProcessings()); List<Processing> procDto = new ArrayList<>(); Hibernate3DtoCopier copier = new Hibernate3DtoCopier(); for (Processing p : procs) { procDto.add(copier.hibernate2dto(Processing.class, p)); } return procDto; } }