/*
* Copyright (C) 2012 SeqWare
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
package net.sourceforge.seqware.webservice.resources.queries;
import java.sql.SQLException;
import java.util.ArrayList;
import java.util.Comparator;
import java.util.List;
import java.util.SortedSet;
import java.util.TreeSet;
import net.sf.beanlib.hibernate3.Hibernate3DtoCopier;
import net.sourceforge.seqware.common.business.WorkflowRunService;
import net.sourceforge.seqware.common.factory.BeanFactory;
import net.sourceforge.seqware.common.model.Processing;
import net.sourceforge.seqware.common.model.WorkflowRun;
import net.sourceforge.seqware.common.model.lists.ProcessingList;
import net.sourceforge.seqware.common.util.xmltools.JaxbObject;
import net.sourceforge.seqware.common.util.xmltools.XmlTools;
import static net.sourceforge.seqware.webservice.resources.BasicResource.parseClientInt;
import static net.sourceforge.seqware.webservice.resources.BasicResource.testIfNull;
import net.sourceforge.seqware.webservice.resources.BasicRestlet;
import org.restlet.Context;
import org.restlet.Request;
import org.restlet.Response;
import org.restlet.data.Status;
import org.w3c.dom.Document;
/**
* <p>
* WorkflowRunIDProcessingsResource class.
* </p>
*
* @author mtaschuk
* @version $Id: $Id
*/
public class WorkflowRunIDProcessingsResource extends BasicRestlet {
/**
* <p>
* Constructor for WorkflowRunIDProcessingsResource.
* </p>
*
* @param context
* a {@link org.restlet.Context} object.
*/
public WorkflowRunIDProcessingsResource(Context context) {
super(context);
}
/** {@inheritDoc} */
@Override
public void handle(Request request, Response response) {
authenticate(request.getChallengeResponse().getIdentifier());
try {
String id = request.getAttributes().get("workflowRunId").toString();
List<Processing> procs = collectProcessingList(parseClientInt(id));
ProcessingList list = new ProcessingList();
list.setList(procs);
JaxbObject<ProcessingList> jaxbTool = new JaxbObject<>();
Document doc = XmlTools.marshalToDocument(jaxbTool, list);
response.setEntity(XmlTools.getRepresentation(doc));
} catch (SQLException ex) {
ex.printStackTrace();
response.setStatus(Status.SERVER_ERROR_INTERNAL, ex);
}
}
/**
* <p>
* collectProcessingList.
* </p>
*
* @param wrSWA
* a int.
* @return a {@link java.util.List} object.
* @throws java.sql.SQLException
* if any.
*/
public List<Processing> collectProcessingList(int wrSWA) throws SQLException {
WorkflowRunService wrs = BeanFactory.getWorkflowRunServiceBean();
WorkflowRun run = (WorkflowRun) testIfNull(wrs.findBySWAccession(wrSWA));
SortedSet<Processing> procs = new TreeSet<>(new Comparator<Processing>() {
@Override
public int compare(Processing t, Processing t1) {
return t.getCreateTimestamp().compareTo(t1.getCreateTimestamp());
}
});
if (run.getProcessings() != null) procs.addAll(run.getProcessings());
if (run.getOffspringProcessings() != null) procs.addAll(run.getOffspringProcessings());
List<Processing> procDto = new ArrayList<>();
Hibernate3DtoCopier copier = new Hibernate3DtoCopier();
for (Processing p : procs) {
procDto.add(copier.hibernate2dto(Processing.class, p));
}
return procDto;
}
}