Experiment.java

/*
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 * and open the template in the editor.
 */
package io.seqware.webservice.generated.model;

import java.io.Serializable;
import java.math.BigInteger;
import java.sql.Timestamp;
import java.util.Collection;
import java.util.Date;
import javax.persistence.Basic;
import javax.persistence.CascadeType;
import javax.persistence.Column;
import javax.persistence.Entity;
import javax.persistence.GeneratedValue;
import javax.persistence.GenerationType;
import javax.persistence.Id;
import javax.persistence.JoinColumn;
import javax.persistence.ManyToOne;
import javax.persistence.NamedQueries;
import javax.persistence.NamedQuery;
import javax.persistence.OneToMany;
import javax.persistence.Table;
import javax.persistence.Temporal;
import javax.persistence.TemporalType;
import javax.persistence.Version;
import javax.validation.constraints.NotNull;
import javax.validation.constraints.Size;
import javax.xml.bind.annotation.XmlRootElement;
import javax.xml.bind.annotation.XmlTransient;

/**
 * 
 * @author boconnor
 */
@Entity
@Table(name = "experiment")
@XmlRootElement
@NamedQueries({
        @NamedQuery(name = "Experiment.findAll", query = "SELECT e FROM Experiment e"),
        @NamedQuery(name = "Experiment.findByExperimentId", query = "SELECT e FROM Experiment e WHERE e.experimentId = :experimentId"),
        @NamedQuery(name = "Experiment.findByName", query = "SELECT e FROM Experiment e WHERE e.name = :name"),
        @NamedQuery(name = "Experiment.findByTitle", query = "SELECT e FROM Experiment e WHERE e.title = :title"),
        @NamedQuery(name = "Experiment.findByDescription", query = "SELECT e FROM Experiment e WHERE e.description = :description"),
        @NamedQuery(name = "Experiment.findByAlias", query = "SELECT e FROM Experiment e WHERE e.alias = :alias"),
        @NamedQuery(name = "Experiment.findByAccession", query = "SELECT e FROM Experiment e WHERE e.accession = :accession"),
        @NamedQuery(name = "Experiment.findByStatus", query = "SELECT e FROM Experiment e WHERE e.status = :status"),
        @NamedQuery(name = "Experiment.findByCenterName", query = "SELECT e FROM Experiment e WHERE e.centerName = :centerName"),
        @NamedQuery(name = "Experiment.findBySequenceSpace", query = "SELECT e FROM Experiment e WHERE e.sequenceSpace = :sequenceSpace"),
        @NamedQuery(name = "Experiment.findByBaseCaller", query = "SELECT e FROM Experiment e WHERE e.baseCaller = :baseCaller"),
        @NamedQuery(name = "Experiment.findByQualityScorer", query = "SELECT e FROM Experiment e WHERE e.qualityScorer = :qualityScorer"),
        @NamedQuery(name = "Experiment.findByQualityNumberOfLevels", query = "SELECT e FROM Experiment e WHERE e.qualityNumberOfLevels = :qualityNumberOfLevels"),
        @NamedQuery(name = "Experiment.findByQualityMultiplier", query = "SELECT e FROM Experiment e WHERE e.qualityMultiplier = :qualityMultiplier"),
        @NamedQuery(name = "Experiment.findByQualityType", query = "SELECT e FROM Experiment e WHERE e.qualityType = :qualityType"),
        @NamedQuery(name = "Experiment.findByExpectedNumberRuns", query = "SELECT e FROM Experiment e WHERE e.expectedNumberRuns = :expectedNumberRuns"),
        @NamedQuery(name = "Experiment.findByExpectedNumberSpots", query = "SELECT e FROM Experiment e WHERE e.expectedNumberSpots = :expectedNumberSpots"),
        @NamedQuery(name = "Experiment.findByExpectedNumberReads", query = "SELECT e FROM Experiment e WHERE e.expectedNumberReads = :expectedNumberReads"),
        @NamedQuery(name = "Experiment.findBySwAccession", query = "SELECT e FROM Experiment e WHERE e.swAccession = :swAccession"),
        @NamedQuery(name = "Experiment.findByCreateTstmp", query = "SELECT e FROM Experiment e WHERE e.createTstmp = :createTstmp"),
        @NamedQuery(name = "Experiment.findByUpdateTstmp", query = "SELECT e FROM Experiment e WHERE e.updateTstmp = :updateTstmp") })
public class Experiment implements Serializable {
    private static final long serialVersionUID = 1L;
    @Id
    @GeneratedValue(strategy = GenerationType.IDENTITY)
    @Basic(optional = false)
    @Column(name = "experiment_id")
    private Integer experimentId;
    @Size(max = 2147483647)
    @Column(name = "name")
    private String name;
    @Size(max = 2147483647)
    @Column(name = "title")
    private String title;
    @Size(max = 2147483647)
    @Column(name = "description")
    private String description;
    @Size(max = 2147483647)
    @Column(name = "alias")
    private String alias;
    @Size(max = 2147483647)
    @Column(name = "accession")
    private String accession;
    @Size(max = 2147483647)
    @Column(name = "status")
    private String status;
    @Size(max = 2147483647)
    @Column(name = "center_name")
    private String centerName;
    @Size(max = 2147483647)
    @Column(name = "sequence_space")
    private String sequenceSpace;
    @Size(max = 2147483647)
    @Column(name = "base_caller")
    private String baseCaller;
    @Size(max = 2147483647)
    @Column(name = "quality_scorer")
    private String qualityScorer;
    @Column(name = "quality_number_of_levels")
    private Integer qualityNumberOfLevels;
    @Column(name = "quality_multiplier")
    private Integer qualityMultiplier;
    @Size(max = 2147483647)
    @Column(name = "quality_type")
    private String qualityType;
    @Column(name = "expected_number_runs")
    private Integer expectedNumberRuns;
    @Column(name = "expected_number_spots")
    private BigInteger expectedNumberSpots;
    @Column(name = "expected_number_reads")
    private BigInteger expectedNumberReads;
    @Column(name = "sw_accession", insertable = false, updatable = false)
    private Integer swAccession;
    @Basic(optional = false)
    @NotNull
    @Column(name = "create_tstmp")
    @Temporal(TemporalType.TIMESTAMP)
    private Date createTstmp;
    @Column(name = "update_tstmp")
    @Version
    private Timestamp updateTstmp;
    @OneToMany(cascade = CascadeType.ALL, mappedBy = "experimentId")
    private Collection<ExperimentAttribute> experimentAttributeCollection;
    @JoinColumn(name = "study_id", referencedColumnName = "study_id")
    @ManyToOne(optional = false)
    private Study studyId;
    @JoinColumn(name = "owner_id", referencedColumnName = "registration_id")
    @ManyToOne
    private Registration ownerId;
    @JoinColumn(name = "platform_id", referencedColumnName = "platform_id")
    @ManyToOne
    private Platform platformId;
    @JoinColumn(name = "experiment_spot_design_id", referencedColumnName = "experiment_spot_design_id")
    @ManyToOne
    private ExperimentSpotDesign experimentSpotDesignId;
    @JoinColumn(name = "experiment_library_design_id", referencedColumnName = "experiment_library_design_id")
    @ManyToOne
    private ExperimentLibraryDesign experimentLibraryDesignId;
    @OneToMany(cascade = CascadeType.ALL, mappedBy = "experimentId")
    private Collection<ProcessingExperiments> processingExperimentsCollection;
    @OneToMany(mappedBy = "experimentId")
    private Collection<Sample> sampleCollection;
    @OneToMany(cascade = CascadeType.ALL, mappedBy = "experimentId")
    private Collection<ExperimentLink> experimentLinkCollection;

    public Experiment() {
    }

    public Experiment(Integer experimentId) {
        this.experimentId = experimentId;
    }

    public Experiment(Integer experimentId, Date createTstmp) {
        this.experimentId = experimentId;
        this.createTstmp = createTstmp;
    }

    public Integer getExperimentId() {
        return experimentId;
    }

    public void setExperimentId(Integer experimentId) {
        this.experimentId = experimentId;
    }

    public String getName() {
        return name;
    }

    public void setName(String name) {
        this.name = name;
    }

    public String getTitle() {
        return title;
    }

    public void setTitle(String title) {
        this.title = title;
    }

    public String getDescription() {
        return description;
    }

    public void setDescription(String description) {
        this.description = description;
    }

    public String getAlias() {
        return alias;
    }

    public void setAlias(String alias) {
        this.alias = alias;
    }

    public String getAccession() {
        return accession;
    }

    public void setAccession(String accession) {
        this.accession = accession;
    }

    public String getStatus() {
        return status;
    }

    public void setStatus(String status) {
        this.status = status;
    }

    public String getCenterName() {
        return centerName;
    }

    public void setCenterName(String centerName) {
        this.centerName = centerName;
    }

    public String getSequenceSpace() {
        return sequenceSpace;
    }

    public void setSequenceSpace(String sequenceSpace) {
        this.sequenceSpace = sequenceSpace;
    }

    public String getBaseCaller() {
        return baseCaller;
    }

    public void setBaseCaller(String baseCaller) {
        this.baseCaller = baseCaller;
    }

    public String getQualityScorer() {
        return qualityScorer;
    }

    public void setQualityScorer(String qualityScorer) {
        this.qualityScorer = qualityScorer;
    }

    public Integer getQualityNumberOfLevels() {
        return qualityNumberOfLevels;
    }

    public void setQualityNumberOfLevels(Integer qualityNumberOfLevels) {
        this.qualityNumberOfLevels = qualityNumberOfLevels;
    }

    public Integer getQualityMultiplier() {
        return qualityMultiplier;
    }

    public void setQualityMultiplier(Integer qualityMultiplier) {
        this.qualityMultiplier = qualityMultiplier;
    }

    public String getQualityType() {
        return qualityType;
    }

    public void setQualityType(String qualityType) {
        this.qualityType = qualityType;
    }

    public Integer getExpectedNumberRuns() {
        return expectedNumberRuns;
    }

    public void setExpectedNumberRuns(Integer expectedNumberRuns) {
        this.expectedNumberRuns = expectedNumberRuns;
    }

    public BigInteger getExpectedNumberSpots() {
        return expectedNumberSpots;
    }

    public void setExpectedNumberSpots(BigInteger expectedNumberSpots) {
        this.expectedNumberSpots = expectedNumberSpots;
    }

    public BigInteger getExpectedNumberReads() {
        return expectedNumberReads;
    }

    public void setExpectedNumberReads(BigInteger expectedNumberReads) {
        this.expectedNumberReads = expectedNumberReads;
    }

    public Integer getSwAccession() {
        return swAccession;
    }

    public void setSwAccession(Integer swAccession) {
        this.swAccession = swAccession;
    }

    public Date getCreateTstmp() {
        return createTstmp;
    }

    public void setCreateTstmp(Date createTstmp) {
        this.createTstmp = createTstmp;
    }

    public Timestamp getUpdateTstmp() {
        return updateTstmp;
    }

    public void setUpdateTstmp(Timestamp updateTstmp) {
        this.updateTstmp = updateTstmp;
    }

    @XmlTransient
    public Collection<ExperimentAttribute> getExperimentAttributeCollection() {
        return experimentAttributeCollection;
    }

    public void setExperimentAttributeCollection(Collection<ExperimentAttribute> experimentAttributeCollection) {
        this.experimentAttributeCollection = experimentAttributeCollection;
    }

    public Study getStudyId() {
        return studyId;
    }

    public void setStudyId(Study studyId) {
        this.studyId = studyId;
    }

    public Registration getOwnerId() {
        return ownerId;
    }

    public void setOwnerId(Registration ownerId) {
        this.ownerId = ownerId;
    }

    public Platform getPlatformId() {
        return platformId;
    }

    public void setPlatformId(Platform platformId) {
        this.platformId = platformId;
    }

    public ExperimentSpotDesign getExperimentSpotDesignId() {
        return experimentSpotDesignId;
    }

    public void setExperimentSpotDesignId(ExperimentSpotDesign experimentSpotDesignId) {
        this.experimentSpotDesignId = experimentSpotDesignId;
    }

    public ExperimentLibraryDesign getExperimentLibraryDesignId() {
        return experimentLibraryDesignId;
    }

    public void setExperimentLibraryDesignId(ExperimentLibraryDesign experimentLibraryDesignId) {
        this.experimentLibraryDesignId = experimentLibraryDesignId;
    }

    @XmlTransient
    public Collection<ProcessingExperiments> getProcessingExperimentsCollection() {
        return processingExperimentsCollection;
    }

    public void setProcessingExperimentsCollection(Collection<ProcessingExperiments> processingExperimentsCollection) {
        this.processingExperimentsCollection = processingExperimentsCollection;
    }

    @XmlTransient
    public Collection<Sample> getSampleCollection() {
        return sampleCollection;
    }

    public void setSampleCollection(Collection<Sample> sampleCollection) {
        this.sampleCollection = sampleCollection;
    }

    @XmlTransient
    public Collection<ExperimentLink> getExperimentLinkCollection() {
        return experimentLinkCollection;
    }

    public void setExperimentLinkCollection(Collection<ExperimentLink> experimentLinkCollection) {
        this.experimentLinkCollection = experimentLinkCollection;
    }

    @Override
    public int hashCode() {
        int hash = 0;
        hash += (experimentId != null ? experimentId.hashCode() : 0);
        return hash;
    }

    @Override
    public boolean equals(Object object) {
        // TODO: Warning - this method won't work in the case the id fields are not set
        if (!(object instanceof Experiment)) {
            return false;
        }
        Experiment other = (Experiment) object;
        if ((this.experimentId == null && other.experimentId != null)
                || (this.experimentId != null && !this.experimentId.equals(other.experimentId))) {
            return false;
        }
        return true;
    }

    @Override
    public String toString() {
        return "io.seqware.webservice.model.Experiment[ experimentId=" + experimentId + " ]";
    }

}