/*
* Copyright (C) 2011 SeqWare
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
package net.sourceforge.seqware.webservice.resources.tables;
import java.io.IOException;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import net.sf.beanlib.hibernate3.Hibernate3DtoCopier;
import net.sourceforge.seqware.common.business.ProcessingService;
import net.sourceforge.seqware.common.factory.BeanFactory;
import net.sourceforge.seqware.common.model.File;
import net.sourceforge.seqware.common.model.Processing;
import net.sourceforge.seqware.common.model.lists.ProcessingList;
import net.sourceforge.seqware.common.util.Log;
import net.sourceforge.seqware.common.util.xmltools.JaxbObject;
import net.sourceforge.seqware.common.util.xmltools.XmlTools;
import org.restlet.data.Status;
import org.restlet.representation.Representation;
import org.restlet.resource.Get;
import org.restlet.resource.Post;
import org.restlet.resource.ResourceException;
import org.w3c.dom.Document;
import org.xml.sax.SAXException;
/**
* <p>
* ProcessResource class.
* </p>
*
* @author mtaschuk
* @version $Id: $Id
*/
public class ProcessResource extends DatabaseResource {
/**
* <p>
* Constructor for ProcessResource.
* </p>
*/
public ProcessResource() {
super("processing");
}
/**
* {@inheritDoc}
*
* @return
*/
@Override
public Representation post(Representation entity) {
return super.post(entity);
}
/**
* <p>
* getXml.
* </p>
*/
@Get
public void getXml() {
authenticate();
Hibernate3DtoCopier copier = new Hibernate3DtoCopier();
Document line;
ProcessingService ss = BeanFactory.getProcessingServiceBean();
if (queryValues.get("id") != null) {
JaxbObject<Processing> jaxbTool = new JaxbObject<>();
Processing p = (Processing) testIfNull(ss.findByID(parseClientInt(queryValues.get("id"))));
Processing dto = copier.hibernate2dto(Processing.class, p);
if (fields.contains("files")) {
Set<File> files = p.getFiles();
Set<File> copiedFiles = new HashSet<>();
if (files != null) {
for (File file : files) {
copiedFiles.add(copier.hibernate2dto(File.class, file));
}
dto.setFiles(copiedFiles);
} else {
Log.info("Could not be found :files");
}
}
line = XmlTools.marshalToDocument(jaxbTool, dto);
} else {
JaxbObject<ProcessingList> jaxbTool = new JaxbObject<>();
ProcessingList list = new ProcessingList();
List<Processing> processings = (List<Processing>) testIfNull(ss.list());
for (Processing p : processings) {
list.add(copier.hibernate2dto(Processing.class, p));
}
line = XmlTools.marshalToDocument(jaxbTool, list);
}
getResponse().setEntity(XmlTools.getRepresentation(line));
}
/**
* <p>
* postJaxb.
* </p>
*
* @param entity
* a {@link org.restlet.representation.Representation} object.
*/
@Post("xml")
public void postJaxb(Representation entity) {
authenticate();
try {
JaxbObject<Processing> jo = new JaxbObject<>();
String text = entity.getText();
Processing p;
try {
p = (Processing) XmlTools.unMarshal(jo, new Processing(), text);
} catch (SAXException ex) {
throw new ResourceException(Status.CLIENT_ERROR_UNPROCESSABLE_ENTITY, ex);
}
if (p.getOwner() != null) {
p.setOwner(BeanFactory.getRegistrationServiceBean().findByEmailAddress(p.getOwner().getEmailAddress()));
} else {
p.setOwner(registration);
}
// persist p
ProcessingService ps = BeanFactory.getProcessingServiceBean();
Integer id = ps.insert(registration, p);
Processing newProcessing = testIfNull(ps.findBySWAccession(id));
Hibernate3DtoCopier copier = new Hibernate3DtoCopier();
Processing detachedP = copier.hibernate2dto(Processing.class, newProcessing);
Document line = XmlTools.marshalToDocument(jo, detachedP);
getResponse().setEntity(XmlTools.getRepresentation(line));
getResponse().setLocationRef(getRequest().getRootRef() + "/processes/" + detachedP.getSwAccession());
getResponse().setStatus(Status.SUCCESS_CREATED);
} catch (SecurityException e) {
getResponse().setStatus(Status.CLIENT_ERROR_FORBIDDEN, e);
} catch (IOException e) {
e.printStackTrace();
getResponse().setStatus(Status.CLIENT_ERROR_BAD_REQUEST, e);
} catch (Exception e) {
e.printStackTrace();
getResponse().setStatus(Status.SERVER_ERROR_INTERNAL, e);
}
}
}