SetNodeIdInSession.java

package net.sourceforge.solexatools.util;

import javax.servlet.http.HttpServletRequest;

import net.sourceforge.seqware.common.model.Experiment;
import net.sourceforge.seqware.common.model.Lane;
import net.sourceforge.seqware.common.model.Processing;
import net.sourceforge.seqware.common.model.Sample;
import net.sourceforge.seqware.common.model.SequencerRun;
import net.sourceforge.seqware.common.model.Study;

/**
 * <p>
 * SetNodeIdInSession class.
 * </p>
 * 
 * @author boconnor
 * @version $Id: $Id
 */
public class SetNodeIdInSession {

    /**
     * <p>
     * removeStudy.
     * </p>
     * 
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void removeStudy(HttpServletRequest request) {
        request.getSession(false).removeAttribute("rootStudyId");
        request.getSession(false).removeAttribute("objectId");
    }

    /**
     * <p>
     * setStudy.
     * </p>
     * 
     * @param studyId
     *            a {@link java.lang.Integer} object.
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void setStudy(Integer studyId, HttpServletRequest request) {
        request.getSession(false).setAttribute("rootStudyId", studyId);
        request.getSession(false).setAttribute("objectId", "study_" + studyId);
    }

    /**
     * <p>
     * setExperiment.
     * </p>
     * 
     * @param experiment
     *            a {@link net.sourceforge.seqware.common.model.Experiment} object.
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void setExperiment(Experiment experiment, HttpServletRequest request) {
        Study rootStudy = FindRootUtil.getStudy(experiment);
        request.getSession(false).setAttribute("rootStudyId", rootStudy.getStudyId());
        request.getSession(false).setAttribute("objectId", "exp_" + experiment.getExperimentId());
    }

    /**
     * <p>
     * setSampleForStudy.
     * </p>
     * 
     * @param sample
     *            a {@link net.sourceforge.seqware.common.model.Sample} object.
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void setSampleForStudy(Sample sample, HttpServletRequest request) {
        Study rootStudy = FindRootUtil.getStudy(sample);
        request.getSession(false).setAttribute("rootStudyId", rootStudy.getStudyId());
        request.getSession(false).setAttribute("objectId", "sam_" + sample.getSampleId());
    }

    /**
     * <p>
     * setLaneForStudy.
     * </p>
     * 
     * @param lane
     *            a {@link net.sourceforge.seqware.common.model.Lane} object.
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void setLaneForStudy(Lane lane, HttpServletRequest request) {
        Study rootStudy = FindRootUtil.getStudy(lane);
        request.getSession(false).setAttribute("rootStudyId", rootStudy.getStudyId());
        request.getSession(false).setAttribute("objectId", "seq_" + lane.getLaneId());
    }

    /**
     * <p>
     * setProcessingForStudy.
     * </p>
     * 
     * @param processing
     *            a {@link net.sourceforge.seqware.common.model.Processing} object.
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void setProcessingForStudy(Processing processing, HttpServletRequest request) {
        Study rootStudy = FindRootUtil.getStudy(processing);
        request.getSession(false).setAttribute("rootStudyId", rootStudy.getStudyId());
        request.getSession(false).setAttribute("objectId", "ae_" + processing.getProcessingId());
    }

    /**
     * <p>
     * setFileForStudy.
     * </p>
     * 
     * @param processing
     *            a {@link net.sourceforge.seqware.common.model.Processing} object.
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void setFileForStudy(Processing processing, HttpServletRequest request) {
        Study rootStudy = FindRootUtil.getStudy(processing);
        request.getSession(false).setAttribute("rootStudyId", rootStudy.getStudyId());
        request.getSession(false).setAttribute("objectId", "aefl_" + processing.getProcessingId());
    }

    // FOR SEQUENCER RUN
    /**
     * <p>
     * removeSequencerRun.
     * </p>
     * 
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void removeSequencerRun(HttpServletRequest request) {
        request.getSession(false).removeAttribute("rootSequencerRunId");
        request.getSession(false).removeAttribute("objectSRId");
    }

    /**
     * <p>
     * setSequencerRun.
     * </p>
     * 
     * @param sequencerRunId
     *            a {@link java.lang.Integer} object.
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void setSequencerRun(Integer sequencerRunId, HttpServletRequest request) {
        request.getSession(false).setAttribute("rootSequencerRunId", sequencerRunId);
        request.getSession(false).setAttribute("objectSRId", "sr_" + sequencerRunId);
    }

    /**
     * <p>
     * setLaneForSequrncerRun.
     * </p>
     * 
     * @param lane
     *            a {@link net.sourceforge.seqware.common.model.Lane} object.
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void setLaneForSequrncerRun(Lane lane, HttpServletRequest request) {
        SequencerRun rootSequencerRun = FindRootUtil.getSequencerRun(lane);
        request.getSession(false).setAttribute("rootSequencerRunId", rootSequencerRun.getSequencerRunId());
        request.getSession(false).setAttribute("objectSRId", "seq_" + lane.getLaneId());
    }

    /**
     * <p>
     * setProcessingForSequrncerRun.
     * </p>
     * 
     * @param processing
     *            a {@link net.sourceforge.seqware.common.model.Processing} object.
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void setProcessingForSequrncerRun(Processing processing, HttpServletRequest request) {
        SequencerRun rootSequencerRun = FindRootUtil.getSequencerRun(processing);
        request.getSession(false).setAttribute("rootSequencerRunId", rootSequencerRun.getSequencerRunId());
        request.getSession(false).setAttribute("objectSRId", "ae_" + processing.getProcessingId());
    }

    /**
     * <p>
     * setFileForSequrncerRun.
     * </p>
     * 
     * @param processing
     *            a {@link net.sourceforge.seqware.common.model.Processing} object.
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void setFileForSequrncerRun(Processing processing, HttpServletRequest request) {
        SequencerRun rootSequencerRun = FindRootUtil.getSequencerRun(processing);
        request.getSession(false).setAttribute("rootSequencerRunId", rootSequencerRun.getSequencerRunId());
        request.getSession(false).setAttribute("objectSRId", "aefl_" + processing.getProcessingId());
    }

    // FOR ANALYSIS WORKFLOW
    /**
     * <p>
     * removeWorkflowRun.
     * </p>
     * 
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void removeWorkflowRun(HttpServletRequest request) {
        request.getSession(false).removeAttribute("rootWorkflowRunId");
        request.getSession(false).removeAttribute("objectWFRId");
    }

    /**
     * <p>
     * setWorkflowRun.
     * </p>
     * 
     * @param workflowRunId
     *            a {@link java.lang.Integer} object.
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void setWorkflowRun(Integer workflowRunId, HttpServletRequest request) {
        request.getSession(false).setAttribute("rootWorkflowRunId", workflowRunId);
        request.getSession(false).setAttribute("objectWFRId", "wfr_" + workflowRunId);
    }

    /**
     * <p>
     * setWorkflowRunWithSample.
     * </p>
     * 
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void setWorkflowRunWithSample(HttpServletRequest request) {
        Integer rootId = Integer.parseInt(request.getParameter("rootId"));
        request.getSession(false).setAttribute("rootWorkflowRunId", rootId);
        request.getSession(false).setAttribute("objectWFRId", "wfrs_" + rootId);
    }

    /**
     * <p>
     * setSampleForWorkflowRun.
     * </p>
     * 
     * @param sample
     *            a {@link net.sourceforge.seqware.common.model.Sample} object.
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void setSampleForWorkflowRun(Sample sample, HttpServletRequest request) {
        // // Study rootStudy = FindRootUtil.getStudy(sample);
        Integer rootId = Integer.parseInt(request.getParameter("rootId"));
        request.getSession(false).setAttribute("rootWorkflowRunId", rootId);
        request.getSession(false).setAttribute("objectWFRId", "sam_" + sample.getSampleId());
    }

    /**
     * <p>
     * setProcessingForWorkflowRun.
     * </p>
     * 
     * @param processing
     *            a {@link net.sourceforge.seqware.common.model.Processing} object.
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void setProcessingForWorkflowRun(Processing processing, HttpServletRequest request) {
        // // SequencerRun rootSequencerRun = FindRootUtil.getSequencerRun(processing);
        Integer rootId = Integer.parseInt(request.getParameter("rootId"));
        request.getSession(false).setAttribute("rootWorkflowRunId", rootId);
        request.getSession(false).setAttribute("objectWFRId", "ae_" + processing.getProcessingId());
    }

    /**
     * <p>
     * setFileForWorkflowRun.
     * </p>
     * 
     * @param processing
     *            a {@link net.sourceforge.seqware.common.model.Processing} object.
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void setFileForWorkflowRun(Processing processing, HttpServletRequest request) {
        // // SequencerRun rootSequencerRun = FindRootUtil.getSequencerRun(processing);
        Integer rootId = Integer.parseInt(request.getParameter("rootId"));
        request.getSession(false).setAttribute("rootWorkflowRunId", rootId);
        request.getSession(false).setAttribute("objectWFRId", "aefl_" + processing.getProcessingId());
    }

    // FOR ANALYSIS RUNNING WORKFLOW
    /**
     * <p>
     * removeWorkflowRunRunning.
     * </p>
     * 
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void removeWorkflowRunRunning(HttpServletRequest request) {
        request.getSession(false).removeAttribute("rootWorkflowRunRunningId");
        request.getSession(false).removeAttribute("objectWFRRId");
    }

    /**
     * <p>
     * setWorkflowRunRunning.
     * </p>
     * 
     * @param workflowRunId
     *            a {@link java.lang.Integer} object.
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void setWorkflowRunRunning(Integer workflowRunId, HttpServletRequest request) {
        Integer rootId = Integer.parseInt(request.getParameter("rootId"));
        request.getSession(false).setAttribute("rootWorkflowRunRunningId", rootId);
        request.getSession(false).setAttribute("objectWFRRId", "wfr_" + workflowRunId);
    }

    /**
     * <p>
     * setWorkflowRunRunningWithSample.
     * </p>
     * 
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void setWorkflowRunRunningWithSample(HttpServletRequest request) {
        Integer rootId = Integer.parseInt(request.getParameter("rootId"));
        request.getSession(false).setAttribute("rootWorkflowRunRunningId", rootId);
        request.getSession(false).setAttribute("objectWFRRId", "wfrs_" + rootId);
    }

    /**
     * <p>
     * setSampleForWorkflowRunRunning.
     * </p>
     * 
     * @param sample
     *            a {@link net.sourceforge.seqware.common.model.Sample} object.
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void setSampleForWorkflowRunRunning(Sample sample, HttpServletRequest request) {
        Integer rootId = Integer.parseInt(request.getParameter("rootId"));
        request.getSession(false).setAttribute("rootWorkflowRunRunningId", rootId);
        request.getSession(false).setAttribute("objectWFRRId", "sam_" + sample.getSampleId());
    }

    /**
     * <p>
     * setProcessingForWorkflowRunRunning.
     * </p>
     * 
     * @param processing
     *            a {@link net.sourceforge.seqware.common.model.Processing} object.
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void setProcessingForWorkflowRunRunning(Processing processing, HttpServletRequest request) {
        Integer rootId = Integer.parseInt(request.getParameter("rootId"));
        request.getSession(false).setAttribute("rootWorkflowRunRunningId", rootId);
        request.getSession(false).setAttribute("objectWFRRId", "ae_" + processing.getProcessingId());
    }

    /**
     * <p>
     * setFileForWorkflowRunRunning.
     * </p>
     * 
     * @param processing
     *            a {@link net.sourceforge.seqware.common.model.Processing} object.
     * @param request
     *            a {@link javax.servlet.http.HttpServletRequest} object.
     */
    public static void setFileForWorkflowRunRunning(Processing processing, HttpServletRequest request) {
        Integer rootId = Integer.parseInt(request.getParameter("rootId"));
        request.getSession(false).setAttribute("rootWorkflowRunRunningId", rootId);
        request.getSession(false).setAttribute("objectWFRRId", "aefl_" + processing.getProcessingId());
    }
}