WorkflowServiceImpl.java

package net.sourceforge.seqware.common.business.impl;

import java.util.Date;
import java.util.List;
import java.util.SortedSet;
import net.sourceforge.seqware.common.business.WorkflowService;
import net.sourceforge.seqware.common.dao.WorkflowDAO;
import net.sourceforge.seqware.common.model.Registration;
import net.sourceforge.seqware.common.model.SequencerRun;
import net.sourceforge.seqware.common.model.Workflow;
import net.sourceforge.seqware.common.model.WorkflowParam;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;

/**
 * <p>
 * WorkflowServiceImpl class.
 * </p>
 * 
 * @author boconnor
 * @version $Id: $Id
 */
public class WorkflowServiceImpl implements WorkflowService {

    private WorkflowDAO workflowDAO = null;
    private static final Log LOG = LogFactory.getLog(WorkflowServiceImpl.class);

    /**
     * <p>
     * Constructor for WorkflowServiceImpl.
     * </p>
     */
    public WorkflowServiceImpl() {
        super();
    }

    /**
     * {@inheritDoc}
     * 
     * Sets a private member variable with an instance of an implementation of WorkflowDAO. This method is called by the Spring framework at
     * run time.
     * 
     * @see WorkflowDAO
     */
    @Override
    public void setWorkflowDAO(WorkflowDAO workflowDAO) {
        this.workflowDAO = workflowDAO;
    }

    /** {@inheritDoc} */
    @Override
    public Integer insert(Workflow workflow) {
        workflow.setCreateTimestamp(new Date());
        return workflowDAO.insert(workflow);
    }

    /** {@inheritDoc} */
    @Override
    public void update(Workflow workflow) {
        workflowDAO.update(workflow);
    }

    /** {@inheritDoc} */
    @Override
    public void delete(Workflow workflow) {
        workflowDAO.delete(workflow);
    }

    /**
     * <p>
     * list.
     * </p>
     * 
     * @return a {@link java.util.List} object.
     */
    @Override
    public List<Workflow> list() {
        return workflowDAO.list();
    }

    /** {@inheritDoc} */
    @Override
    public List<Workflow> list(Registration registration) {
        return workflowDAO.list(registration);
    }

    /** {@inheritDoc} */
    @Override
    public List<Workflow> listMyShared(Registration registration) {
        return workflowDAO.listMyShared(registration);
    }

    /** {@inheritDoc} */
    @Override
    public List<Workflow> listSharedWithMe(Registration registration) {
        return workflowDAO.listSharedWithMe(registration);
    }

    /** {@inheritDoc} */
    @Override
    public List<Workflow> listSequencerRunsWorkflows(SequencerRun sr) {
        return workflowDAO.listWorkflows(sr);
    }

    /** {@inheritDoc} */
    @Override
    public List<Workflow> findByName(String name) {
        List<Workflow> workflows = null;
        if (name != null) {
            try {
                workflows = workflowDAO.findByName(name.trim());
            } catch (Exception exception) {
                LOG.debug("Cannot find Workflow by name " + name);
            }
        }
        return workflows;
    }

    /** {@inheritDoc} */
    @Override
    public Workflow findByID(Integer wfID) {
        Workflow workflow = null;
        if (wfID != null) {
            try {
                workflow = workflowDAO.findByID(wfID);
            } catch (Exception exception) {
                LOG.error("Cannot find Workflow by wfID " + wfID);
                LOG.error(exception.getMessage());
            }
        }
        return workflow;
    }

    /** {@inheritDoc} */
    @Override
    public Workflow findByIDWithParams(Integer wfID) {
        Workflow workflow = findByID(wfID);
        if (workflow != null) {
            SortedSet<WorkflowParam> params = workflow.getWorkflowParams();
            for (WorkflowParam param : params) {
                param.getWorkflowParamId();
            }
        }
        return workflow;
    }

    /** {@inheritDoc} */
    @Override
    public Workflow findBySWAccession(Integer swAccession) {
        Workflow workflow = null;
        if (swAccession != null) {
            try {
                workflow = workflowDAO.findBySWAccession(swAccession);
            } catch (Exception exception) {
                LOG.error("Cannot find Workflow by swAccession " + swAccession);
                LOG.error(exception.getMessage());
            }
        }
        return workflow;
    }

    /** {@inheritDoc} */
    @Override
    public List<Workflow> findByCriteria(String criteria, boolean isCaseSens) {
        return workflowDAO.findByCriteria(criteria, isCaseSens);
    }

    /** {@inheritDoc} */
    @Override
    public Workflow updateDetached(Workflow workflow) {
        return workflowDAO.updateDetached(workflow);
    }

    /** {@inheritDoc} */
    @Override
    public Integer insert(Registration registration, Workflow workflow) {
        workflow.setCreateTimestamp(new Date());
        return workflowDAO.insert(registration, workflow);
    }

    /** {@inheritDoc} */
    @Override
    public Workflow updateDetached(Registration registration, Workflow workflow) {
        return workflowDAO.updateDetached(registration, workflow);
    }

    /** {@inheritDoc} */
    @Override
    public void update(Registration registration, Workflow workflow) {
        workflowDAO.update(registration, workflow);
    }
}

// ex:sw=4:ts=4: