/*
* Copyright (C) 2011 SeqWare
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
package net.sourceforge.seqware.webservice.resources.tables;
import java.io.IOException;
import java.util.List;
import net.sf.beanlib.hibernate3.Hibernate3DtoCopier;
import net.sourceforge.seqware.common.business.IUSService;
import net.sourceforge.seqware.common.business.LaneService;
import net.sourceforge.seqware.common.business.SampleService;
import net.sourceforge.seqware.common.factory.BeanFactory;
import net.sourceforge.seqware.common.model.IUS;
import net.sourceforge.seqware.common.model.Lane;
import net.sourceforge.seqware.common.model.Registration;
import net.sourceforge.seqware.common.model.Sample;
import net.sourceforge.seqware.common.model.lists.IUSList;
import net.sourceforge.seqware.common.util.xmltools.JaxbObject;
import net.sourceforge.seqware.common.util.xmltools.XmlTools;
import org.apache.log4j.Logger;
import org.restlet.data.Status;
import org.restlet.representation.Representation;
import org.restlet.resource.Get;
import org.restlet.resource.Post;
import org.restlet.resource.ResourceException;
import org.w3c.dom.Document;
import org.xml.sax.SAXException;
/**
* <p>
* IusResource class.
* </p>
*
* @author mtaschuk
* @version $Id: $Id
*/
public class IusResource extends DatabaseResource {
private Logger logger;
/**
* <p>
* Constructor for IusResource.
* </p>
*/
public IusResource() {
super("ius");
logger = Logger.getLogger(IUS.class);
}
/**
* <p>
* getXml.
* </p>
*
* @throws java.io.IOException
* if any.
*/
@Get
public void getXml() throws IOException {
authenticate();
IUSService ss = BeanFactory.getIUSServiceBean();
Hibernate3DtoCopier copier = new Hibernate3DtoCopier();
Document line;
if (queryValues.get("id") != null) {
IUS p = (IUS) testIfNull(ss.findByID(parseClientInt(queryValues.get("id"))));
JaxbObject<IUS> jaxbTool = new JaxbObject<>();
IUS dto = copier.hibernate2dto(IUS.class, p);
line = XmlTools.marshalToDocument(jaxbTool, dto);
} else {
JaxbObject<IUSList> jaxbTool = new JaxbObject<>();
IUSList list = new IUSList();
List<IUS> iuses = (List<IUS>) testIfNull(ss.list());
for (IUS i : iuses) {
list.add(copier.hibernate2dto(IUS.class, i));
}
line = XmlTools.marshalToDocument(jaxbTool, list);
}
getResponse().setEntity(XmlTools.getRepresentation(line));
}
/**
* <p>
* postJaxb.
* </p>
*
* @param entity
* a {@link org.restlet.representation.Representation} object.
* @throws org.restlet.resource.ResourceException
* if any.
*/
@Post("xml")
public void postJaxb(Representation entity) throws ResourceException {
authenticate();
try {
JaxbObject<IUS> jo = new JaxbObject<>();
String text = entity.getText();
IUS o = null;
try {
o = (IUS) XmlTools.unMarshal(jo, new IUS(), text);
} catch (SAXException ex) {
throw new ResourceException(Status.CLIENT_ERROR_UNPROCESSABLE_ENTITY, ex);
}
if (o.getOwner() == null) {
o.setOwner(registration);
} else {
Registration reg = BeanFactory.getRegistrationServiceBean().findByEmailAddress(o.getOwner().getEmailAddress());
if (reg != null) {
o.setOwner(reg);
} else {
logger.info("Could not be found: " + o.getOwner());
}
}
// attempt to save foreign keys, I guess this is replacing an empty object with a fully populated one?
if (o.getLane() != null) {
LaneService ps = BeanFactory.getLaneServiceBean();
Lane lane = (Lane) testIfNull(ps.findByID(o.getLane().getLaneId()));
o.setLane(lane);
}
// attempt to save foreign keys, I guess this is replacing an empty object with a fully populated one?
if (o.getSample() != null) {
SampleService ps = BeanFactory.getSampleServiceBean();
Sample sample = (Sample) testIfNull(ps.findByID(o.getSample().getSampleId()));
o.setSample(sample);
}
// persist object
IUSService service = BeanFactory.getIUSServiceBean();
Integer swAccession = service.insert(registration, o);
IUS obj = (IUS) testIfNull(service.findBySWAccession(swAccession));
Hibernate3DtoCopier copier = new Hibernate3DtoCopier();
IUS detachedIUS = copier.hibernate2dto(IUS.class, obj);
Document line = XmlTools.marshalToDocument(jo, detachedIUS);
getResponse().setEntity(XmlTools.getRepresentation(line));
getResponse().setLocationRef(getRequest().getRootRef() + "/ius/" + detachedIUS.getSwAccession());
getResponse().setStatus(Status.SUCCESS_CREATED);
} catch (SecurityException e) {
getResponse().setStatus(Status.CLIENT_ERROR_FORBIDDEN, e.getMessage());
} catch (IOException e) {
e.printStackTrace();
getResponse().setStatus(Status.CLIENT_ERROR_BAD_REQUEST);
} catch (Exception e) {
e.printStackTrace();
getResponse().setStatus(Status.SERVER_ERROR_INTERNAL, e.getMessage());
}
}
}