HibernateTest.java

package org.genedb.querying.tmpquery;

import java.text.ParseException;
import java.text.SimpleDateFormat;
import java.util.Date;
import java.util.List;

import junit.framework.Assert;

import org.apache.log4j.Logger;
import org.genedb.db.taxon.TaxonNode;
import org.genedb.db.taxon.TaxonNodeManager;
import org.genedb.querying.core.QueryException;
import org.junit.Test;
import org.junit.runner.RunWith;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.test.context.ContextConfiguration;
import org.springframework.test.context.junit4.AbstractTransactionalJUnit4SpringContextTests;
import org.springframework.test.context.junit4.SpringJUnit4ClassRunner;
import org.springframework.test.context.transaction.TransactionConfiguration;
import org.springframework.transaction.annotation.Transactional;

/**
 *
 * A testcase set up for testing HQLQuery derived classes.
 *
 * @author gv1
 *
 */
@RunWith(SpringJUnit4ClassRunner.class)
@ContextConfiguration(locations={"classpath:testContext.xml"})
@TransactionConfiguration
@Transactional
public class HibernateTest extends AbstractTransactionalJUnit4SpringContextTests {

	private static final Logger logger = Logger.getLogger(HibernateTest.class);

	@Autowired
	private TaxonNodeManager taxonNodeManager;

	//@Autowired
	//private DateCountQuery dateCountQuery;

	@Test
	public void testTaxonNodeManager()
	{
		logger.info("Running taxon test");
		TaxonNode[] taxons = { taxonNodeManager.getTaxonNodeByString("Lbraziliensis", true) };
		Assert.assertTrue(taxons.length == 1);
		Assert.assertNotNull(taxons[0]);
		logger.debug(taxons[0].getLabel());
	}


	//@Test
	public void testDateCountQuery() throws ParseException, QueryException
	{
		logger.info("Running date count test");

		SimpleDateFormat dateFormat = new SimpleDateFormat( "yyyy-MM-dd" );
		Date date = dateFormat.parse("2009-06-01");

		TaxonNode taxonNode = taxonNodeManager.getTaxonNodeForLabel("Root");
	    List<TaxonNode> taxonList = taxonNode.getAllChildren();

	    Assert.assertTrue(taxonList.size() > 0);

	    //dateCountQuery.setDate(date);
		//dateCountQuery.setAfter(true);

		int numberOfOrganismsWithChanges = 0;

	    for (TaxonNode taxon : taxonList)
		{
			//if (! taxon.isOrganism())
				continue;

			//TaxonNode[] taxons = {taxon};

			//dateCountQuery.setTaxons(taxons);

			//@SuppressWarnings("unchecked")
			//List results = dateCountQuery.getResults();

			//long count = (Long) results.get(0);

			//logger.trace(count);
			//if (count > 0)
			//	numberOfOrganismsWithChanges++;

		}
		logger.debug("Number of organisms with changes = " + numberOfOrganismsWithChanges + " / " + taxonList.size());
		Assert.assertTrue(numberOfOrganismsWithChanges > 0);

	}
}