NPEntryFastaStreamWriterTest.java

package org.nextprot.api.web.service.impl.writer;

import org.junit.Test;
import org.nextprot.api.commons.utils.StringUtils;
import org.nextprot.api.web.dbunit.base.mvc.WebIntegrationBaseTest;

import java.io.ByteArrayOutputStream;
import java.io.PrintWriter;
import java.io.Writer;
import java.util.Arrays;

import static org.junit.Assert.assertEquals;

public class NPEntryFastaStreamWriterTest extends WebIntegrationBaseTest {

    @Test
    public void testFastaExportStream() throws Exception {

        ByteArrayOutputStream out = new ByteArrayOutputStream();
        Writer writer = new PrintWriter(out);

        EntryVelocityBasedStreamWriter exporter = new EntryFastaStreamWriter(writer);

        exporter.write(Arrays.asList("NX_P06213", "NX_P01308"));

        assertEquals(">nxp|NX_P06213-1|INSR|Insulin receptor|Long"+StringUtils.CR_LF +
                "MATGGRRGAAAAPLLVAVAALLLGAAGHLYPGEVCPGMDIRNNLTRLHELENCSVIEGHL"+StringUtils.CR_LF +
                "QILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYAL"+StringUtils.CR_LF +
                "VIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNYIVLNKDDNE"+StringUtils.CR_LF +
                "ECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECL"+StringUtils.CR_LF +
                "GNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQG"+StringUtils.CR_LF +
                "CHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGC"+StringUtils.CR_LF +
                "TVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETL"+StringUtils.CR_LF +
                "EIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQE"+StringUtils.CR_LF +
                "RNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQ"+StringUtils.CR_LF +
                "NVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFS"+StringUtils.CR_LF +
                "DERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWE"+StringUtils.CR_LF +
                "RQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQIL"+StringUtils.CR_LF +
                "KELEESSFRKTFEDYLHNVVFVPRKTSSGTGAEDPRPSRKRRSLGDVGNVTVAVPTVAAF"+StringUtils.CR_LF +
                "PNTSSTSVPTSPEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYV"+StringUtils.CR_LF +
                "SARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCV"+StringUtils.CR_LF +
                "SRKHFALERGCRLRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIAKIIIG"+StringUtils.CR_LF +
                "PLIFVFLFSVVIGSIYLFLRKRQPDGPLGPLYASSNPEYLSASDVFPCSVYVPDEWEVSR"+StringUtils.CR_LF +
                "EKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKG"+StringUtils.CR_LF +
                "FTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMA"+StringUtils.CR_LF +
                "AEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPV"+StringUtils.CR_LF +
                "RWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDN"+StringUtils.CR_LF +
                "CPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPEVSFFHSEENKAPESEELEME"+StringUtils.CR_LF +
                "FEDMENVPLDRSSHCQREEAGGRDGGSSLGFKRSYEEHIPYTHMNGGKKNGRILTLPRSN"+StringUtils.CR_LF +
                "PS"+StringUtils.CR_LF +
                ">nxp|NX_P06213-2|INSR|Insulin receptor|Short"+StringUtils.CR_LF +
                "MATGGRRGAAAAPLLVAVAALLLGAAGHLYPGEVCPGMDIRNNLTRLHELENCSVIEGHL"+StringUtils.CR_LF + 
                "QILLMFKTRPEDFRDLSFPKLIMITDYLLLFRVYGLESLKDLFPNLTVIRGSRLFFNYAL"+StringUtils.CR_LF +
                "VIFEMVHLKELGLYNLMNITRGSVRIEKNNELCYLATIDWSRILDSVEDNYIVLNKDDNE"+StringUtils.CR_LF +
                "ECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECL"+StringUtils.CR_LF +
                "GNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQG"+StringUtils.CR_LF +
                "CHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGC"+StringUtils.CR_LF +
                "TVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRSYALVSLSFFRKLRLIRGETL"+StringUtils.CR_LF +
                "EIGNYSFYALDNQNLRQLWDWSKHNLTITQGKLFFHYNPKLCLSEIHKMEEVSGTKGRQE"+StringUtils.CR_LF +
                "RNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQ"+StringUtils.CR_LF +
                "NVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFS"+StringUtils.CR_LF +
                "DERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWE"+StringUtils.CR_LF +
                "RQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQIL"+StringUtils.CR_LF +
                "KELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNVTVAVPTVAAFPNTSSTSVPTSP"+StringUtils.CR_LF +
                "EEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADD"+StringUtils.CR_LF +
                "IVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCVSRKHFALERGCR"+StringUtils.CR_LF +
                "LRGLSPGNYSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIAKIIIGPLIFVFLFSVVI"+StringUtils.CR_LF +
                "GSIYLFLRKRQPDGPLGPLYASSNPEYLSASDVFPCSVYVPDEWEVSREKITLLRELGQG"+StringUtils.CR_LF +
                "SFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGV"+StringUtils.CR_LF +
                "VSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNA"+StringUtils.CR_LF +
                "KKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGV"+StringUtils.CR_LF +
                "FTTSSDMWSFGVVLWEITSLAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMC"+StringUtils.CR_LF +
                "WQFNPKMRPTFLEIVNLLKDDLHPSFPEVSFFHSEENKAPESEELEMEFEDMENVPLDRS"+StringUtils.CR_LF +
                "SHCQREEAGGRDGGSSLGFKRSYEEHIPYTHMNGGKKNGRILTLPRSNPS"+StringUtils.CR_LF +
                ">nxp|NX_P01308-1|INS|Insulin|Iso 1"+StringUtils.CR_LF +
                "MALWMRLLPLLALLALWGPDPAAAFVNQHLCGSHLVEALYLVCGERGFFYTPKTRREAED"+StringUtils.CR_LF +
                "LQVGQVELGGGPGAGSLQPLALEGSLQKRGIVEQCCTSICSLYQLENYCN"+StringUtils.CR_LF, out.toString());
    }
}