CosmicXrefURLResolver.java

package org.nextprot.api.core.utils.dbxref.resolver;

import org.nextprot.api.core.domain.CvDatabasePreferredLink;
import org.nextprot.api.core.domain.DbXref;

class CosmicXrefURLResolver extends DefaultDbXrefURLResolver {

    @Override
    public String getTemplateURL(DbXref xref) {

        String accession = xref.getAccession();

        if (accession.startsWith("COSM"))
            return CvDatabasePreferredLink.COSMIC_MUTATION.getLink();
        else if (accession.startsWith("COSS"))
            return CvDatabasePreferredLink.COSMIC_SAMPLE.getLink();
        return CvDatabasePreferredLink.COSMIC_GENE.getLink();
    }

    @Override
    protected String getAccessionNumber(DbXref xref) {

        String accession = xref.getAccession();

        if (accession.startsWith("COSM"))
            return accession.replaceFirst("COSM", "");
        else if (accession.startsWith("COSS"))
            return accession.replaceFirst("COSS", "");

        return accession;
    }

    @Override
    public String getValidXrefURL(String xrefURL, String databaseName) {

        return "http://cancer.sanger.ac.uk/cosmic/";
    }
}