package org.nextprot.api.core.service;

import com.github.springtestdbunit.annotation.DatabaseOperation;
import com.github.springtestdbunit.annotation.DatabaseSetup;
import org.junit.Test;
import org.nextprot.api.core.domain.annotation.Annotation;
import org.nextprot.api.core.domain.annotation.AnnotationEvidence;
import org.nextprot.api.core.test.base.CoreUnitBaseTest;
import org.springframework.beans.factory.annotation.Autowired;

import java.util.List;

import static org.junit.Assert.assertEquals;

/**
 * @author pam
 */

@DatabaseSetup(value="AnnotationMVCTest.xml", type = DatabaseOperation.INSERT)
public class AnnotationServiceTest extends CoreUnitBaseTest {

	
	@Autowired AnnotationService annotationService;
	@Autowired
	private EntryBuilderService entryBuilderService;

	@Test
	public void shouldGetAnOrphanetAnnotationFromService() {

		List<Annotation> annotations = annotationService.findAnnotationsExcludingBed("NX_P10000");
		assertEquals(1,annotations.size());
		Annotation a = annotations.get(0);
		assertEquals("disease",a.getCategory());
		assertEquals("Some XR_ORPHA_100021 xref disease property value", a.getDescription());
		assertEquals("GOLD", a.getQualityQualifier());
		assertEquals(1, a.getEvidences().size());
		AnnotationEvidence evi = a.getEvidences().get(0);
		assertEquals("Orphanet", evi.getAssignedBy());
		assertEquals("curated", evi.getAssignmentMethod());
		assertEquals("IC", evi.getQualifierType());
		assertEquals(false, evi.isNegativeEvidence());
		assertEquals(true, evi.isValid());
		assertEquals("XR_ORPHA_100021", evi.getResourceAccession());
		assertEquals("Orphanet", evi.getResourceDb());
	}
}