RrbsCpgDetailMetrics.java

/*
 * The MIT License
 *
 * Copyright (c) 2013 The Broad Institute
 *
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 * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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package picard.analysis;

import picard.metrics.MultilevelMetrics;

/**
 * Holds information about CpG sites encountered for RRBS processing QC
 * @author jgentry
 */
public final class RrbsCpgDetailMetrics extends MultilevelMetrics {
	/** Sequence the CpG is seen in */
	public String SEQUENCE_NAME;
	/** Position within the sequence of the CpG site */
	public Integer POSITION;
	/** Number of times this CpG site was encountered */
	public Integer TOTAL_SITES;
	/** Number of times this CpG site was converted (TG for + strand, CA for - strand) */
	public Integer CONVERTED_SITES;
	/** TOTAL_BASES / CONVERTED_BASES */
	public Double PCT_CONVERTED;
}