/* * The MIT License * * Copyright (c) 2013 The Broad Institute * * Permission is hereby granted, free of charge, to any person obtaining a copy * of this software and associated documentation files (the "Software"), to deal * in the Software without restriction, including without limitation the rights * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell * copies of the Software, and to permit persons to whom the Software is * furnished to do so, subject to the following conditions: * * The above copyright notice and this permission notice shall be included in * all copies or substantial portions of the Software. * * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN * THE SOFTWARE. */ package htsjdk.samtools.util.zip; import htsjdk.samtools.Defaults; import htsjdk.samtools.SAMException; import java.lang.reflect.Constructor; import java.util.zip.Deflater; /** * Create zlib-based Deflater if JNI library and other require libraries are available, otherwise create standard * JDK Deflater. * Java 7 has its own Deflater implementation (libzip.so). This is almost as fast as a zlib-based Deflater, so in general * there isn't a compelling reason to use zlib. However, Intel has created a hardware-assisted zlib implementation * as part of their IPP (Integrated Performance Primitives) package that can run significantly faster on some Intel * hardware. We have seen compression times reduced by 13% to 33% depending on particular hardware, and hope that * newer Intel processors will be even better. * * Note that this class will no longer be necessary once Java 8 is required, because JDK 8 will use zlib instead * of libzip implementation. */ public class DeflaterFactory { private static Constructor<IntelDeflater> intelDeflaterConstructor; static { try { if (Defaults.TRY_USE_INTEL_DEFLATER) { final Class<IntelDeflater> clazz = (Class<IntelDeflater>) Class.forName("htsjdk.samtools.util.zip.IntelDeflater"); intelDeflaterConstructor = clazz.getConstructor(Integer.TYPE, Boolean.TYPE); } } catch (ClassNotFoundException e) { intelDeflaterConstructor = null; } catch (NoSuchMethodException e) { intelDeflaterConstructor = null; } catch (UnsatisfiedLinkError e) { intelDeflaterConstructor = null; } } public static Deflater makeDeflater(final int compressionLevel, final boolean nowrap) { if (intelDeflaterConstructor != null) { try { return intelDeflaterConstructor.newInstance(compressionLevel, nowrap); } catch (Exception e) { throw new SAMException("Exception constructing IntelDeflater", e); } } else { return new Deflater(compressionLevel, nowrap); } } public static boolean usingIntelDeflater() { return intelDeflaterConstructor != null; } }