/*
Copyright 2006 by Sean Luke and George Mason University
Licensed under the Academic Free License version 3.0
See the file "LICENSE" for more information
*/
package sim.app.celegans;
import sim.portrayal3d.network.*;
import sim.portrayal3d.continuous.*;
import sim.display3d.*;
import sim.engine.*;
import sim.display.*;
import javax.swing.*;
import sim.portrayal3d.simple.*;
import java.awt.*;
public class CelegansWithUI extends GUIState
{
public Display3D display;
public Display3D neuronDisplay;
public JFrame displayFrame;
public JFrame neuronDisplayFrame;
ContinuousPortrayal3D nodePortrayal = new ContinuousPortrayal3D();
ContinuousPortrayal3D neuronPortrayal = new ContinuousPortrayal3D();
NetworkPortrayal3D synapsePortrayal = new NetworkPortrayal3D();
public static void main(String[] args)
{
new CelegansWithUI().createController();
}
public CelegansWithUI() { super(new Celegans( System.currentTimeMillis())); }
public CelegansWithUI(SimState state)
{
super(state);
}
public static String getName() { return "Caenorhabditis elegans"; }
public Object getSimulationInspectedObject() { return state; }
public void start()
{
super.start();
setupPortrayals();
}
public void load(SimState state)
{
super.load(state);
setupPortrayals();
}
public void setupPortrayals()
{
// display.destroySceneGraph();
Celegans tut = (Celegans) state;
nodePortrayal.setField( tut.cells );
//LabelledPortrayal3D l = new LabelledPortrayal3D(new CellPortrayal(50), null);
// l.setLabelGoesOnTop(true); // sadly, doesn't work. Java3D bugs are a pain.
// nodePortrayal.setPortrayalForAll(new CircledPortrayal3D(l, 60f, true));
nodePortrayal.setPortrayalForAll(new CellPortrayal(50));
neuronPortrayal.setField( tut.neurons );
neuronPortrayal.setPortrayalForAll(new SpherePortrayal3D());
synapsePortrayal.setField( new SpatialNetwork3D(tut.neurons, tut.synapses) );
SimpleEdgePortrayal3D sep = new SimpleEdgePortrayal3D(Color.red, Color.blue, Color.white);
sep.setLabelScale(sep.getLabelScale()/4.0);
synapsePortrayal.setPortrayalForAll(sep);
display.createSceneGraph();
display.reset();
}
public void init(Controller c)
{
super.init(c);
// make the displayer
display = new Display3D(600, 600,this);
display.attach( nodePortrayal, "Cells" );
display.scale(1.0/40.0);
// tell the Display3D to inspect everybody, but to only select a single cell.
display.setSelectsAll(false, true);
displayFrame = display.createFrame();
displayFrame.setTitle("Embryo");
c.registerFrame(displayFrame); // register the frame so it appears in the "Display" list
displayFrame.setVisible(true);
// display.mSelectBehavior.setTolerance(10.0f);
// make the neuron displayer
neuronDisplay = new Display3D(400,400,this);
neuronDisplay.attach( neuronPortrayal, "Neurons" );
neuronDisplay.attach( synapsePortrayal, "Synapses" );
neuronDisplay.scale(1.0/40.0);
// tell the Display3D to inspect everybody, but to only select a single cell.
neuronDisplay.setSelectsAll(false, true);
neuronDisplayFrame = neuronDisplay.createFrame();
neuronDisplayFrame.setTitle("Synapses");
c.registerFrame(neuronDisplayFrame); // register the frame so it appears in the "Display" list
//neuronDisplayFrame.setVisible(true);
}
public void quit()
{
super.quit();
if (displayFrame!=null) displayFrame.dispose();
displayFrame = null;
display = null;
if (neuronDisplayFrame!=null) neuronDisplayFrame.dispose();
neuronDisplayFrame = null;
neuronDisplay = null;
}
}