/*
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing,
* software distributed under the License is distributed on an
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
* KIND, either express or implied. See the License for the
* specific language governing permissions and limitations
* under the License.
*/
package org.apache.sysml.runtime.io;
import java.io.IOException;
import java.util.Iterator;
import org.apache.hadoop.fs.FileSystem;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.SequenceFile;
import org.apache.hadoop.mapred.JobConf;
import org.apache.sysml.conf.ConfigurationManager;
import org.apache.sysml.runtime.DMLRuntimeException;
import org.apache.sysml.runtime.matrix.data.IJV;
import org.apache.sysml.runtime.matrix.data.MatrixBlock;
import org.apache.sysml.runtime.matrix.data.MatrixCell;
import org.apache.sysml.runtime.matrix.data.MatrixIndexes;
import org.apache.sysml.runtime.util.MapReduceTool;
public class WriterBinaryCell extends MatrixWriter
{
@Override
public void writeMatrixToHDFS(MatrixBlock src, String fname, long rlen, long clen, int brlen, int bclen, long nnz)
throws IOException, DMLRuntimeException
{
//prepare file access
JobConf job = new JobConf(ConfigurationManager.getCachedJobConf());
Path path = new Path( fname );
//if the file already exists on HDFS, remove it.
MapReduceTool.deleteFileIfExistOnHDFS( fname );
//core write
writeBinaryCellMatrixToHDFS(path, job, src, rlen, clen, brlen, bclen);
FileSystem fs = FileSystem.get(job);
IOUtilFunctions.deleteCrcFilesFromLocalFileSystem(fs, path);
}
@Override
@SuppressWarnings("deprecation")
public void writeEmptyMatrixToHDFS(String fname, long rlen, long clen, int brlen, int bclen)
throws IOException, DMLRuntimeException
{
JobConf job = new JobConf(ConfigurationManager.getCachedJobConf());
Path path = new Path( fname );
FileSystem fs = FileSystem.get(job);
SequenceFile.Writer writer = null;
try {
writer = new SequenceFile.Writer(fs, job, path,
MatrixIndexes.class, MatrixCell.class);
MatrixIndexes index = new MatrixIndexes(1, 1);
MatrixCell cell = new MatrixCell(0);
writer.append(index, cell);
}
finally {
IOUtilFunctions.closeSilently(writer);
}
IOUtilFunctions.deleteCrcFilesFromLocalFileSystem(fs, path);
}
@SuppressWarnings("deprecation")
protected void writeBinaryCellMatrixToHDFS( Path path, JobConf job, MatrixBlock src, long rlen, long clen, int brlen, int bclen )
throws IOException
{
boolean sparse = src.isInSparseFormat();
boolean entriesWritten = false;
FileSystem fs = FileSystem.get(job);
SequenceFile.Writer writer = new SequenceFile.Writer(fs, job, path, MatrixIndexes.class, MatrixCell.class);
MatrixIndexes indexes = new MatrixIndexes();
MatrixCell cell = new MatrixCell();
int rows = src.getNumRows();
int cols = src.getNumColumns();
try
{
//bound check per block
if( rows > rlen || cols > clen )
{
throw new IOException("Matrix block [1:"+rows+",1:"+cols+"] " +
"out of overall matrix range [1:"+rlen+",1:"+clen+"].");
}
if( sparse ) //SPARSE
{
Iterator<IJV> iter = src.getSparseBlockIterator();
while( iter.hasNext() )
{
IJV lcell = iter.next();
indexes.setIndexes(lcell.getI()+1, lcell.getJ()+1);
cell.setValue(lcell.getV());
writer.append(indexes, cell);
entriesWritten = true;
}
}
else //DENSE
{
for( int i=0; i<rows; i++ )
for( int j=0; j<cols; j++ )
{
double lvalue = src.getValueDenseUnsafe(i, j);
if( lvalue != 0 ) //for nnz
{
indexes.setIndexes(i+1, j+1);
cell.setValue(lvalue);
writer.append(indexes, cell);
entriesWritten = true;
}
}
}
//handle empty result
if ( !entriesWritten ) {
writer.append(new MatrixIndexes(1, 1), new MatrixCell(0));
}
}
finally
{
IOUtilFunctions.closeSilently(writer);
}
}
}