/* * Licensed to the Apache Software Foundation (ASF) under one * or more contributor license agreements. See the NOTICE file * distributed with this work for additional information * regarding copyright ownership. The ASF licenses this file * to you under the Apache License, Version 2.0 (the * "License"); you may not use this file except in compliance * with the License. You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, * software distributed under the License is distributed on an * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY * KIND, either express or implied. See the License for the * specific language governing permissions and limitations * under the License. */ package org.apache.sysml.runtime.io; import java.io.IOException; import org.apache.hadoop.fs.FileSystem; import org.apache.hadoop.fs.Path; import org.apache.hadoop.io.LongWritable; import org.apache.hadoop.io.SequenceFile; import org.apache.hadoop.mapred.JobConf; import org.apache.sysml.conf.ConfigurationManager; import org.apache.sysml.runtime.DMLRuntimeException; import org.apache.sysml.runtime.matrix.data.FrameBlock; import org.apache.sysml.runtime.util.MapReduceTool; /** * Single-threaded frame binary block writer. * */ public class FrameWriterBinaryBlock extends FrameWriter { @Override public final void writeFrameToHDFS( FrameBlock src, String fname, long rlen, long clen ) throws IOException, DMLRuntimeException { //prepare file access JobConf job = new JobConf(ConfigurationManager.getCachedJobConf()); Path path = new Path( fname ); //if the file already exists on HDFS, remove it. MapReduceTool.deleteFileIfExistOnHDFS( fname ); //bound check for src block if( src.getNumRows() > rlen || src.getNumColumns() > clen ) { throw new IOException("Frame block [1:"+src.getNumRows()+",1:"+src.getNumColumns()+"] " + "out of overall frame range [1:"+rlen+",1:"+clen+"]."); } //write binary block to hdfs (sequential/parallel) writeBinaryBlockFrameToHDFS( path, job, src, rlen, clen ); } protected void writeBinaryBlockFrameToHDFS( Path path, JobConf job, FrameBlock src, long rlen, long clen ) throws IOException, DMLRuntimeException { FileSystem fs = FileSystem.get(job); int blen = ConfigurationManager.getBlocksize(); //sequential write to single file writeBinaryBlockFrameToSequenceFile(path, job, fs, src, blen, 0, (int)rlen); } /** * Internal primitive to write a block-aligned row range of a frame to a single sequence file, * which is used for both single- and multi-threaded writers (for consistency). * * @param path file path * @param job job configuration * @param fs file system * @param src frame block * @param blen block length * @param rl lower row * @param ru upper row * @throws DMLRuntimeException if DMLRuntimeException occurs * @throws IOException if IOException occurs */ @SuppressWarnings("deprecation") protected final void writeBinaryBlockFrameToSequenceFile( Path path, JobConf job, FileSystem fs, FrameBlock src, int blen, int rl, int ru ) throws DMLRuntimeException, IOException { //1) create sequence file writer SequenceFile.Writer writer = null; writer = new SequenceFile.Writer(fs, job, path, LongWritable.class, FrameBlock.class); try { //2) reblock and write LongWritable index = new LongWritable(); if( src.getNumRows() <= blen ) //opt for single block { //directly write single block index.set(1); writer.append(index, src); } else //general case { //initialize blocks for reuse (at most 4 different blocks required) FrameBlock[] blocks = createFrameBlocksForReuse(src.getSchema(), src.getColumnNames(), src.getNumRows()); //create and write subblocks of frame for(int bi = rl; bi < ru; bi += blen) { int len = Math.min(blen, src.getNumRows()-bi); //get reuse frame block and copy subpart to block (incl meta on first) FrameBlock block = getFrameBlockForReuse(blocks); src.sliceOperations( bi, bi+len-1, 0, src.getNumColumns()-1, block ); if( bi==0 ) //first block block.setColumnMetadata(src.getColumnMetadata()); //append block to sequence file index.set(bi+1); writer.append(index, block); } } } finally { IOUtilFunctions.closeSilently(writer); } } }