/*
* Licensed to the Apache Software Foundation (ASF) under one or more
* contributor license agreements. See the NOTICE file distributed with
* this work for additional information regarding copyright ownership.
* The ASF licenses this file to You under the Apache License, Version 2.0
* (the "License"); you may not use this file except in compliance with
* the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.apache.commons.math4.linear;
import org.junit.Test;
import org.junit.Assert;
import org.apache.commons.math4.TestUtils;
import org.apache.commons.math4.exception.DimensionMismatchException;
import org.apache.commons.math4.exception.MathIllegalArgumentException;
import org.apache.commons.math4.exception.MathIllegalStateException;
import org.apache.commons.math4.exception.NoDataException;
import org.apache.commons.math4.exception.NullArgumentException;
import org.apache.commons.math4.exception.NumberIsTooSmallException;
import org.apache.commons.math4.exception.OutOfRangeException;
import org.apache.commons.math4.linear.Array2DRowRealMatrix;
import org.apache.commons.math4.linear.ArrayRealVector;
import org.apache.commons.math4.linear.DefaultRealMatrixChangingVisitor;
import org.apache.commons.math4.linear.DefaultRealMatrixPreservingVisitor;
import org.apache.commons.math4.linear.LUDecomposition;
import org.apache.commons.math4.linear.MatrixDimensionMismatchException;
import org.apache.commons.math4.linear.MatrixUtils;
import org.apache.commons.math4.linear.NonSquareMatrixException;
import org.apache.commons.math4.linear.RealMatrix;
import org.apache.commons.math4.linear.RealVector;
import org.apache.commons.math4.util.FastMath;
/**
* Test cases for the {@link Array2DRowRealMatrix} class.
*
*/
public final class Array2DRowRealMatrixTest {
// 3 x 3 identity matrix
protected double[][] id = { {1d,0d,0d}, {0d,1d,0d}, {0d,0d,1d} };
// Test data for group operations
protected double[][] testData = { {1d,2d,3d}, {2d,5d,3d}, {1d,0d,8d} };
protected double[][] testDataLU = {{2d, 5d, 3d}, {.5d, -2.5d, 6.5d}, {0.5d, 0.2d, .2d}};
protected double[][] testDataPlus2 = { {3d,4d,5d}, {4d,7d,5d}, {3d,2d,10d} };
protected double[][] testDataMinus = { {-1d,-2d,-3d}, {-2d,-5d,-3d},
{-1d,0d,-8d} };
protected double[] testDataRow1 = {1d,2d,3d};
protected double[] testDataCol3 = {3d,3d,8d};
protected double[][] testDataInv =
{ {-40d,16d,9d}, {13d,-5d,-3d}, {5d,-2d,-1d} };
protected double[] preMultTest = {8,12,33};
protected double[][] testData2 ={ {1d,2d,3d}, {2d,5d,3d}};
protected double[][] testData2T = { {1d,2d}, {2d,5d}, {3d,3d}};
protected double[][] testDataPlusInv =
{ {-39d,18d,12d}, {15d,0d,0d}, {6d,-2d,7d} };
// lu decomposition tests
protected double[][] luData = { {2d,3d,3d}, {0d,5d,7d}, {6d,9d,8d} };
protected double[][] luDataLUDecomposition = { {6d,9d,8d}, {0d,5d,7d},
{0.33333333333333,0d,0.33333333333333} };
// singular matrices
protected double[][] singular = { {2d,3d}, {2d,3d} };
protected double[][] bigSingular = {{1d,2d,3d,4d}, {2d,5d,3d,4d},
{7d,3d,256d,1930d}, {3d,7d,6d,8d}}; // 4th row = 1st + 2nd
protected double[][] detData = { {1d,2d,3d}, {4d,5d,6d}, {7d,8d,10d} };
protected double[][] detData2 = { {1d, 3d}, {2d, 4d}};
// vectors
protected double[] testVector = {1,2,3};
protected double[] testVector2 = {1,2,3,4};
// submatrix accessor tests
protected double[][] subTestData = {{1, 2, 3, 4}, {1.5, 2.5, 3.5, 4.5},
{2, 4, 6, 8}, {4, 5, 6, 7}};
// array selections
protected double[][] subRows02Cols13 = { {2, 4}, {4, 8}};
protected double[][] subRows03Cols12 = { {2, 3}, {5, 6}};
protected double[][] subRows03Cols123 = { {2, 3, 4} , {5, 6, 7}};
// effective permutations
protected double[][] subRows20Cols123 = { {4, 6, 8} , {2, 3, 4}};
protected double[][] subRows31Cols31 = {{7, 5}, {4.5, 2.5}};
// contiguous ranges
protected double[][] subRows01Cols23 = {{3,4} , {3.5, 4.5}};
protected double[][] subRows23Cols00 = {{2} , {4}};
protected double[][] subRows00Cols33 = {{4}};
// row matrices
protected double[][] subRow0 = {{1,2,3,4}};
protected double[][] subRow3 = {{4,5,6,7}};
// column matrices
protected double[][] subColumn1 = {{2}, {2.5}, {4}, {5}};
protected double[][] subColumn3 = {{4}, {4.5}, {8}, {7}};
// tolerances
protected double entryTolerance = 10E-16;
protected double normTolerance = 10E-14;
protected double powerTolerance = 10E-16;
/** test dimensions */
@Test
public void testDimensions() {
Array2DRowRealMatrix m = new Array2DRowRealMatrix(testData);
Array2DRowRealMatrix m2 = new Array2DRowRealMatrix(testData2);
Assert.assertEquals("testData row dimension",3,m.getRowDimension());
Assert.assertEquals("testData column dimension",3,m.getColumnDimension());
Assert.assertTrue("testData is square",m.isSquare());
Assert.assertEquals("testData2 row dimension",m2.getRowDimension(),2);
Assert.assertEquals("testData2 column dimension",m2.getColumnDimension(),3);
Assert.assertTrue("testData2 is not square",!m2.isSquare());
}
/** test copy functions */
@Test
public void testCopyFunctions() {
Array2DRowRealMatrix m1 = new Array2DRowRealMatrix(testData);
Array2DRowRealMatrix m2 = new Array2DRowRealMatrix(m1.getData());
Assert.assertEquals(m2,m1);
Array2DRowRealMatrix m3 = new Array2DRowRealMatrix(testData);
Array2DRowRealMatrix m4 = new Array2DRowRealMatrix(m3.getData(), false);
Assert.assertEquals(m4,m3);
}
/** test add */
@Test
public void testAdd() {
Array2DRowRealMatrix m = new Array2DRowRealMatrix(testData);
Array2DRowRealMatrix mInv = new Array2DRowRealMatrix(testDataInv);
RealMatrix mPlusMInv = m.add(mInv);
double[][] sumEntries = mPlusMInv.getData();
for (int row = 0; row < m.getRowDimension(); row++) {
for (int col = 0; col < m.getColumnDimension(); col++) {
Assert.assertEquals("sum entry entry",
testDataPlusInv[row][col],sumEntries[row][col],
entryTolerance);
}
}
}
/** test add failure */
@Test
public void testAddFail() {
Array2DRowRealMatrix m = new Array2DRowRealMatrix(testData);
Array2DRowRealMatrix m2 = new Array2DRowRealMatrix(testData2);
try {
m.add(m2);
Assert.fail("MathIllegalArgumentException expected");
} catch (MathIllegalArgumentException ex) {
// ignored
}
}
/** test norm */
@Test
public void testNorm() {
Array2DRowRealMatrix m = new Array2DRowRealMatrix(testData);
Array2DRowRealMatrix m2 = new Array2DRowRealMatrix(testData2);
Assert.assertEquals("testData norm",14d,m.getNorm(),entryTolerance);
Assert.assertEquals("testData2 norm",7d,m2.getNorm(),entryTolerance);
}
/** test Frobenius norm */
@Test
public void testFrobeniusNorm() {
Array2DRowRealMatrix m = new Array2DRowRealMatrix(testData);
Array2DRowRealMatrix m2 = new Array2DRowRealMatrix(testData2);
Assert.assertEquals("testData Frobenius norm", FastMath.sqrt(117.0), m.getFrobeniusNorm(), entryTolerance);
Assert.assertEquals("testData2 Frobenius norm", FastMath.sqrt(52.0), m2.getFrobeniusNorm(), entryTolerance);
}
/** test m-n = m + -n */
@Test
public void testPlusMinus() {
Array2DRowRealMatrix m = new Array2DRowRealMatrix(testData);
Array2DRowRealMatrix m2 = new Array2DRowRealMatrix(testDataInv);
TestUtils.assertEquals("m-n = m + -n",m.subtract(m2),
m2.scalarMultiply(-1d).add(m),entryTolerance);
try {
m.subtract(new Array2DRowRealMatrix(testData2));
Assert.fail("Expecting illegalArgumentException");
} catch (MathIllegalArgumentException ex) {
// ignored
}
}
/** test multiply */
@Test
public void testMultiply() {
Array2DRowRealMatrix m = new Array2DRowRealMatrix(testData);
Array2DRowRealMatrix mInv = new Array2DRowRealMatrix(testDataInv);
Array2DRowRealMatrix identity = new Array2DRowRealMatrix(id);
Array2DRowRealMatrix m2 = new Array2DRowRealMatrix(testData2);
TestUtils.assertEquals("inverse multiply",m.multiply(mInv),
identity,entryTolerance);
TestUtils.assertEquals("inverse multiply",mInv.multiply(m),
identity,entryTolerance);
TestUtils.assertEquals("identity multiply",m.multiply(identity),
m,entryTolerance);
TestUtils.assertEquals("identity multiply",identity.multiply(mInv),
mInv,entryTolerance);
TestUtils.assertEquals("identity multiply",m2.multiply(identity),
m2,entryTolerance);
try {
m.multiply(new Array2DRowRealMatrix(bigSingular));
Assert.fail("Expecting illegalArgumentException");
} catch (MathIllegalArgumentException ex) {
// ignored
}
}
//Additional Test for Array2DRowRealMatrixTest.testMultiply
private final double[][] d3 = new double[][] {{1,2,3,4},{5,6,7,8}};
private final double[][] d4 = new double[][] {{1},{2},{3},{4}};
private final double[][] d5 = new double[][] {{30},{70}};
@Test
public void testMultiply2() {
RealMatrix m3 = new Array2DRowRealMatrix(d3);
RealMatrix m4 = new Array2DRowRealMatrix(d4);
RealMatrix m5 = new Array2DRowRealMatrix(d5);
TestUtils.assertEquals("m3*m4=m5", m3.multiply(m4), m5, entryTolerance);
}
@Test
public void testPower() {
Array2DRowRealMatrix m = new Array2DRowRealMatrix(testData);
Array2DRowRealMatrix mInv = new Array2DRowRealMatrix(testDataInv);
Array2DRowRealMatrix mPlusInv = new Array2DRowRealMatrix(testDataPlusInv);
Array2DRowRealMatrix identity = new Array2DRowRealMatrix(id);
TestUtils.assertEquals("m^0", m.power(0),
identity, entryTolerance);
TestUtils.assertEquals("mInv^0", mInv.power(0),
identity, entryTolerance);
TestUtils.assertEquals("mPlusInv^0", mPlusInv.power(0),
identity, entryTolerance);
TestUtils.assertEquals("m^1", m.power(1),
m, entryTolerance);
TestUtils.assertEquals("mInv^1", mInv.power(1),
mInv, entryTolerance);
TestUtils.assertEquals("mPlusInv^1", mPlusInv.power(1),
mPlusInv, entryTolerance);
RealMatrix C1 = m.copy();
RealMatrix C2 = mInv.copy();
RealMatrix C3 = mPlusInv.copy();
for (int i = 2; i <= 10; ++i) {
C1 = C1.multiply(m);
C2 = C2.multiply(mInv);
C3 = C3.multiply(mPlusInv);
TestUtils.assertEquals("m^" + i, m.power(i),
C1, entryTolerance);
TestUtils.assertEquals("mInv^" + i, mInv.power(i),
C2, entryTolerance);
TestUtils.assertEquals("mPlusInv^" + i, mPlusInv.power(i),
C3, entryTolerance);
}
try {
Array2DRowRealMatrix mNotSquare = new Array2DRowRealMatrix(testData2T);
mNotSquare.power(2);
Assert.fail("Expecting NonSquareMatrixException");
} catch (NonSquareMatrixException ex) {
// ignored
}
try {
m.power(-1);
Assert.fail("Expecting MathIllegalArgumentException");
} catch (MathIllegalArgumentException ex) {
// ignored
}
}
/** test trace */
@Test
public void testTrace() {
RealMatrix m = new Array2DRowRealMatrix(id);
Assert.assertEquals("identity trace",3d,m.getTrace(),entryTolerance);
m = new Array2DRowRealMatrix(testData2);
try {
m.getTrace();
Assert.fail("Expecting NonSquareMatrixException");
} catch (NonSquareMatrixException ex) {
// ignored
}
}
/** test sclarAdd */
@Test
public void testScalarAdd() {
RealMatrix m = new Array2DRowRealMatrix(testData);
TestUtils.assertEquals("scalar add",new Array2DRowRealMatrix(testDataPlus2),
m.scalarAdd(2d),entryTolerance);
}
/** test operate */
@Test
public void testOperate() {
RealMatrix m = new Array2DRowRealMatrix(id);
TestUtils.assertEquals("identity operate", testVector,
m.operate(testVector), entryTolerance);
TestUtils.assertEquals("identity operate", testVector,
m.operate(new ArrayRealVector(testVector)).toArray(), entryTolerance);
m = new Array2DRowRealMatrix(bigSingular);
try {
m.operate(testVector);
Assert.fail("Expecting illegalArgumentException");
} catch (MathIllegalArgumentException ex) {
// ignored
}
}
/** test issue MATH-209 */
@Test
public void testMath209() {
RealMatrix a = new Array2DRowRealMatrix(new double[][] {
{ 1, 2 }, { 3, 4 }, { 5, 6 }
}, false);
double[] b = a.operate(new double[] { 1, 1 });
Assert.assertEquals(a.getRowDimension(), b.length);
Assert.assertEquals( 3.0, b[0], 1.0e-12);
Assert.assertEquals( 7.0, b[1], 1.0e-12);
Assert.assertEquals(11.0, b[2], 1.0e-12);
}
/** test transpose */
@Test
public void testTranspose() {
RealMatrix m = new Array2DRowRealMatrix(testData);
RealMatrix mIT = new LUDecomposition(m).getSolver().getInverse().transpose();
RealMatrix mTI = new LUDecomposition(m.transpose()).getSolver().getInverse();
TestUtils.assertEquals("inverse-transpose", mIT, mTI, normTolerance);
m = new Array2DRowRealMatrix(testData2);
RealMatrix mt = new Array2DRowRealMatrix(testData2T);
TestUtils.assertEquals("transpose",mt,m.transpose(),normTolerance);
}
/** test preMultiply by vector */
@Test
public void testPremultiplyVector() {
RealMatrix m = new Array2DRowRealMatrix(testData);
TestUtils.assertEquals("premultiply", m.preMultiply(testVector),
preMultTest, normTolerance);
TestUtils.assertEquals("premultiply", m.preMultiply(new ArrayRealVector(testVector).toArray()),
preMultTest, normTolerance);
m = new Array2DRowRealMatrix(bigSingular);
try {
m.preMultiply(testVector);
Assert.fail("expecting MathIllegalArgumentException");
} catch (MathIllegalArgumentException ex) {
// ignored
}
}
@Test
public void testPremultiply() {
RealMatrix m3 = new Array2DRowRealMatrix(d3);
RealMatrix m4 = new Array2DRowRealMatrix(d4);
RealMatrix m5 = new Array2DRowRealMatrix(d5);
TestUtils.assertEquals("m3*m4=m5", m4.preMultiply(m3), m5, entryTolerance);
Array2DRowRealMatrix m = new Array2DRowRealMatrix(testData);
Array2DRowRealMatrix mInv = new Array2DRowRealMatrix(testDataInv);
Array2DRowRealMatrix identity = new Array2DRowRealMatrix(id);
TestUtils.assertEquals("inverse multiply",m.preMultiply(mInv),
identity,entryTolerance);
TestUtils.assertEquals("inverse multiply",mInv.preMultiply(m),
identity,entryTolerance);
TestUtils.assertEquals("identity multiply",m.preMultiply(identity),
m,entryTolerance);
TestUtils.assertEquals("identity multiply",identity.preMultiply(mInv),
mInv,entryTolerance);
try {
m.preMultiply(new Array2DRowRealMatrix(bigSingular));
Assert.fail("Expecting illegalArgumentException");
} catch (MathIllegalArgumentException ex) {
// ignored
}
}
@Test
public void testGetVectors() {
RealMatrix m = new Array2DRowRealMatrix(testData);
TestUtils.assertEquals("get row",m.getRow(0),testDataRow1,entryTolerance);
TestUtils.assertEquals("get col",m.getColumn(2),testDataCol3,entryTolerance);
try {
m.getRow(10);
Assert.fail("expecting OutOfRangeException");
} catch (OutOfRangeException ex) {
// ignored
}
try {
m.getColumn(-1);
Assert.fail("expecting OutOfRangeException");
} catch (OutOfRangeException ex) {
// ignored
}
}
@Test
public void testGetEntry() {
RealMatrix m = new Array2DRowRealMatrix(testData);
Assert.assertEquals("get entry",m.getEntry(0,1),2d,entryTolerance);
try {
m.getEntry(10, 4);
Assert.fail("Expecting OutOfRangeException");
} catch (OutOfRangeException ex) {
// expected
}
}
/** test examples in user guide */
@Test
public void testExamples() {
// Create a real matrix with two rows and three columns
double[][] matrixData = { {1d,2d,3d}, {2d,5d,3d}};
RealMatrix m = new Array2DRowRealMatrix(matrixData);
// One more with three rows, two columns
double[][] matrixData2 = { {1d,2d}, {2d,5d}, {1d, 7d}};
RealMatrix n = new Array2DRowRealMatrix(matrixData2);
// Now multiply m by n
RealMatrix p = m.multiply(n);
Assert.assertEquals(2, p.getRowDimension());
Assert.assertEquals(2, p.getColumnDimension());
// Invert p
RealMatrix pInverse = new LUDecomposition(p).getSolver().getInverse();
Assert.assertEquals(2, pInverse.getRowDimension());
Assert.assertEquals(2, pInverse.getColumnDimension());
// Solve example
double[][] coefficientsData = {{2, 3, -2}, {-1, 7, 6}, {4, -3, -5}};
RealMatrix coefficients = new Array2DRowRealMatrix(coefficientsData);
RealVector constants = new ArrayRealVector(new double[]{1, -2, 1}, false);
RealVector solution = new LUDecomposition(coefficients).getSolver().solve(constants);
final double cst0 = constants.getEntry(0);
final double cst1 = constants.getEntry(1);
final double cst2 = constants.getEntry(2);
final double sol0 = solution.getEntry(0);
final double sol1 = solution.getEntry(1);
final double sol2 = solution.getEntry(2);
Assert.assertEquals(2 * sol0 + 3 * sol1 -2 * sol2, cst0, 1E-12);
Assert.assertEquals(-1 * sol0 + 7 * sol1 + 6 * sol2, cst1, 1E-12);
Assert.assertEquals(4 * sol0 - 3 * sol1 -5 * sol2, cst2, 1E-12);
}
// test submatrix accessors
@Test
public void testGetSubMatrix() {
RealMatrix m = new Array2DRowRealMatrix(subTestData);
checkGetSubMatrix(m, subRows23Cols00, 2 , 3 , 0, 0, false);
checkGetSubMatrix(m, subRows00Cols33, 0 , 0 , 3, 3, false);
checkGetSubMatrix(m, subRows01Cols23, 0 , 1 , 2, 3, false);
checkGetSubMatrix(m, subRows02Cols13, new int[] { 0, 2 }, new int[] { 1, 3 }, false);
checkGetSubMatrix(m, subRows03Cols12, new int[] { 0, 3 }, new int[] { 1, 2 }, false);
checkGetSubMatrix(m, subRows03Cols123, new int[] { 0, 3 }, new int[] { 1, 2, 3 }, false);
checkGetSubMatrix(m, subRows20Cols123, new int[] { 2, 0 }, new int[] { 1, 2, 3 }, false);
checkGetSubMatrix(m, subRows31Cols31, new int[] { 3, 1 }, new int[] { 3, 1 }, false);
checkGetSubMatrix(m, subRows31Cols31, new int[] { 3, 1 }, new int[] { 3, 1 }, false);
checkGetSubMatrix(m, null, 1, 0, 2, 4, true);
checkGetSubMatrix(m, null, -1, 1, 2, 2, true);
checkGetSubMatrix(m, null, 1, 0, 2, 2, true);
checkGetSubMatrix(m, null, 1, 0, 2, 4, true);
checkGetSubMatrix(m, null, new int[] {}, new int[] { 0 }, true);
checkGetSubMatrix(m, null, new int[] { 0 }, new int[] { 4 }, true);
}
private void checkGetSubMatrix(RealMatrix m, double[][] reference,
int startRow, int endRow, int startColumn, int endColumn,
boolean mustFail) {
try {
RealMatrix sub = m.getSubMatrix(startRow, endRow, startColumn, endColumn);
Assert.assertEquals(new Array2DRowRealMatrix(reference), sub);
if (mustFail) {
Assert.fail("Expecting OutOfRangeException or NumberIsTooSmallException or NoDataException");
}
} catch (OutOfRangeException e) {
if (!mustFail) {
throw e;
}
} catch (NumberIsTooSmallException e) {
if (!mustFail) {
throw e;
}
} catch (NoDataException e) {
if (!mustFail) {
throw e;
}
}
}
private void checkGetSubMatrix(RealMatrix m, double[][] reference,
int[] selectedRows, int[] selectedColumns,
boolean mustFail) {
try {
RealMatrix sub = m.getSubMatrix(selectedRows, selectedColumns);
Assert.assertEquals(new Array2DRowRealMatrix(reference), sub);
if (mustFail) {
Assert.fail("Expecting OutOfRangeException or NumberIsTooSmallException or NoDataException");
}
} catch (OutOfRangeException e) {
if (!mustFail) {
throw e;
}
} catch (NumberIsTooSmallException e) {
if (!mustFail) {
throw e;
}
} catch (NoDataException e) {
if (!mustFail) {
throw e;
}
}
}
@Test
public void testCopySubMatrix() {
RealMatrix m = new Array2DRowRealMatrix(subTestData);
checkCopy(m, subRows23Cols00, 2 , 3 , 0, 0, false);
checkCopy(m, subRows00Cols33, 0 , 0 , 3, 3, false);
checkCopy(m, subRows01Cols23, 0 , 1 , 2, 3, false);
checkCopy(m, subRows02Cols13, new int[] { 0, 2 }, new int[] { 1, 3 }, false);
checkCopy(m, subRows03Cols12, new int[] { 0, 3 }, new int[] { 1, 2 }, false);
checkCopy(m, subRows03Cols123, new int[] { 0, 3 }, new int[] { 1, 2, 3 }, false);
checkCopy(m, subRows20Cols123, new int[] { 2, 0 }, new int[] { 1, 2, 3 }, false);
checkCopy(m, subRows31Cols31, new int[] { 3, 1 }, new int[] { 3, 1 }, false);
checkCopy(m, subRows31Cols31, new int[] { 3, 1 }, new int[] { 3, 1 }, false);
checkCopy(m, null, 1, 0, 2, 4, true);
checkCopy(m, null, -1, 1, 2, 2, true);
checkCopy(m, null, 1, 0, 2, 2, true);
checkCopy(m, null, 1, 0, 2, 4, true);
checkCopy(m, null, new int[] {}, new int[] { 0 }, true);
checkCopy(m, null, new int[] { 0 }, new int[] { 4 }, true);
// rectangular check
double[][] copy = new double[][] { { 0, 0, 0 }, { 0, 0 } };
checkCopy(m, copy, 0, 1, 0, 2, true);
checkCopy(m, copy, new int[] { 0, 1 }, new int[] { 0, 1, 2 }, true);
}
private void checkCopy(RealMatrix m, double[][] reference,
int startRow, int endRow, int startColumn, int endColumn,
boolean mustFail) {
try {
double[][] sub = (reference == null) ?
new double[1][1] : createIdenticalCopy(reference);
m.copySubMatrix(startRow, endRow, startColumn, endColumn, sub);
Assert.assertEquals(new Array2DRowRealMatrix(reference), new Array2DRowRealMatrix(sub));
if (mustFail) {
Assert.fail("Expecting OutOfRangeException or NumberIsTooSmallException or NoDataException");
}
} catch (OutOfRangeException e) {
if (!mustFail) {
throw e;
}
} catch (NumberIsTooSmallException e) {
if (!mustFail) {
throw e;
}
} catch (NoDataException e) {
if (!mustFail) {
throw e;
}
} catch (MatrixDimensionMismatchException e) {
if (!mustFail) {
throw e;
}
}
}
private void checkCopy(RealMatrix m, double[][] reference,
int[] selectedRows, int[] selectedColumns,
boolean mustFail) {
try {
double[][] sub = (reference == null) ?
new double[1][1] : createIdenticalCopy(reference);
m.copySubMatrix(selectedRows, selectedColumns, sub);
Assert.assertEquals(new Array2DRowRealMatrix(reference), new Array2DRowRealMatrix(sub));
if (mustFail) {
Assert.fail("Expecting OutOfRangeException or NumberIsTooSmallException or NoDataException");
}
} catch (OutOfRangeException e) {
if (!mustFail) {
throw e;
}
} catch (NumberIsTooSmallException e) {
if (!mustFail) {
throw e;
}
} catch (NoDataException e) {
if (!mustFail) {
throw e;
}
} catch (MatrixDimensionMismatchException e) {
if (!mustFail) {
throw e;
}
}
}
private double[][] createIdenticalCopy(final double[][] matrix) {
final double[][] matrixCopy = new double[matrix.length][];
for (int i = 0; i < matrixCopy.length; i++) {
matrixCopy[i] = new double[matrix[i].length];
}
return matrixCopy;
}
@Test
public void testGetRowMatrix() {
RealMatrix m = new Array2DRowRealMatrix(subTestData);
RealMatrix mRow0 = new Array2DRowRealMatrix(subRow0);
RealMatrix mRow3 = new Array2DRowRealMatrix(subRow3);
Assert.assertEquals("Row0", mRow0,
m.getRowMatrix(0));
Assert.assertEquals("Row3", mRow3,
m.getRowMatrix(3));
try {
m.getRowMatrix(-1);
Assert.fail("Expecting OutOfRangeException");
} catch (OutOfRangeException ex) {
// expected
}
try {
m.getRowMatrix(4);
Assert.fail("Expecting OutOfRangeException");
} catch (OutOfRangeException ex) {
// expected
}
}
@Test
public void testSetRowMatrix() {
RealMatrix m = new Array2DRowRealMatrix(subTestData);
RealMatrix mRow3 = new Array2DRowRealMatrix(subRow3);
Assert.assertNotSame(mRow3, m.getRowMatrix(0));
m.setRowMatrix(0, mRow3);
Assert.assertEquals(mRow3, m.getRowMatrix(0));
try {
m.setRowMatrix(-1, mRow3);
Assert.fail("Expecting OutOfRangeException");
} catch (OutOfRangeException ex) {
// expected
}
try {
m.setRowMatrix(0, m);
Assert.fail("Expecting MatrixDimensionMismatchException");
} catch (MatrixDimensionMismatchException ex) {
// expected
}
}
@Test
public void testGetColumnMatrix() {
RealMatrix m = new Array2DRowRealMatrix(subTestData);
RealMatrix mColumn1 = new Array2DRowRealMatrix(subColumn1);
RealMatrix mColumn3 = new Array2DRowRealMatrix(subColumn3);
Assert.assertEquals("Column1", mColumn1,
m.getColumnMatrix(1));
Assert.assertEquals("Column3", mColumn3,
m.getColumnMatrix(3));
try {
m.getColumnMatrix(-1);
Assert.fail("Expecting OutOfRangeException");
} catch (OutOfRangeException ex) {
// expected
}
try {
m.getColumnMatrix(4);
Assert.fail("Expecting OutOfRangeException");
} catch (OutOfRangeException ex) {
// expected
}
}
@Test
public void testSetColumnMatrix() {
RealMatrix m = new Array2DRowRealMatrix(subTestData);
RealMatrix mColumn3 = new Array2DRowRealMatrix(subColumn3);
Assert.assertNotSame(mColumn3, m.getColumnMatrix(1));
m.setColumnMatrix(1, mColumn3);
Assert.assertEquals(mColumn3, m.getColumnMatrix(1));
try {
m.setColumnMatrix(-1, mColumn3);
Assert.fail("Expecting OutOfRangeException");
} catch (OutOfRangeException ex) {
// expected
}
try {
m.setColumnMatrix(0, m);
Assert.fail("Expecting MatrixDimensionMismatchException");
} catch (MatrixDimensionMismatchException ex) {
// expected
}
}
@Test
public void testGetRowVector() {
RealMatrix m = new Array2DRowRealMatrix(subTestData);
RealVector mRow0 = new ArrayRealVector(subRow0[0]);
RealVector mRow3 = new ArrayRealVector(subRow3[0]);
Assert.assertEquals("Row0", mRow0, m.getRowVector(0));
Assert.assertEquals("Row3", mRow3, m.getRowVector(3));
try {
m.getRowVector(-1);
Assert.fail("Expecting OutOfRangeException");
} catch (OutOfRangeException ex) {
// expected
}
try {
m.getRowVector(4);
Assert.fail("Expecting OutOfRangeException");
} catch (OutOfRangeException ex) {
// expected
}
}
@Test
public void testSetRowVector() {
RealMatrix m = new Array2DRowRealMatrix(subTestData);
RealVector mRow3 = new ArrayRealVector(subRow3[0]);
Assert.assertNotSame(mRow3, m.getRowMatrix(0));
m.setRowVector(0, mRow3);
Assert.assertEquals(mRow3, m.getRowVector(0));
try {
m.setRowVector(-1, mRow3);
Assert.fail("Expecting OutOfRangeException");
} catch (OutOfRangeException ex) {
// expected
}
try {
m.setRowVector(0, new ArrayRealVector(5));
Assert.fail("Expecting MatrixDimensionMismatchException");
} catch (MatrixDimensionMismatchException ex) {
// expected
}
}
@Test
public void testGetColumnVector() {
RealMatrix m = new Array2DRowRealMatrix(subTestData);
RealVector mColumn1 = columnToVector(subColumn1);
RealVector mColumn3 = columnToVector(subColumn3);
Assert.assertEquals("Column1", mColumn1, m.getColumnVector(1));
Assert.assertEquals("Column3", mColumn3, m.getColumnVector(3));
try {
m.getColumnVector(-1);
Assert.fail("Expecting OutOfRangeException");
} catch (OutOfRangeException ex) {
// expected
}
try {
m.getColumnVector(4);
Assert.fail("Expecting OutOfRangeException");
} catch (OutOfRangeException ex) {
// expected
}
}
@Test
public void testSetColumnVector() {
RealMatrix m = new Array2DRowRealMatrix(subTestData);
RealVector mColumn3 = columnToVector(subColumn3);
Assert.assertNotSame(mColumn3, m.getColumnVector(1));
m.setColumnVector(1, mColumn3);
Assert.assertEquals(mColumn3, m.getColumnVector(1));
try {
m.setColumnVector(-1, mColumn3);
Assert.fail("Expecting OutOfRangeException");
} catch (OutOfRangeException ex) {
// expected
}
try {
m.setColumnVector(0, new ArrayRealVector(5));
Assert.fail("Expecting MatrixDimensionMismatchException");
} catch (MatrixDimensionMismatchException ex) {
// expected
}
}
private RealVector columnToVector(double[][] column) {
double[] data = new double[column.length];
for (int i = 0; i < data.length; ++i) {
data[i] = column[i][0];
}
return new ArrayRealVector(data, false);
}
@Test
public void testGetRow() {
RealMatrix m = new Array2DRowRealMatrix(subTestData);
checkArrays(subRow0[0], m.getRow(0));
checkArrays(subRow3[0], m.getRow(3));
try {
m.getRow(-1);
Assert.fail("Expecting OutOfRangeException");
} catch (OutOfRangeException ex) {
// expected
}
try {
m.getRow(4);
Assert.fail("Expecting OutOfRangeException");
} catch (OutOfRangeException ex) {
// expected
}
}
@Test
public void testSetRow() {
RealMatrix m = new Array2DRowRealMatrix(subTestData);
Assert.assertTrue(subRow3[0][0] != m.getRow(0)[0]);
m.setRow(0, subRow3[0]);
checkArrays(subRow3[0], m.getRow(0));
try {
m.setRow(-1, subRow3[0]);
Assert.fail("Expecting OutOfRangeException");
} catch (OutOfRangeException ex) {
// expected
}
try {
m.setRow(0, new double[5]);
Assert.fail("Expecting MatrixDimensionMismatchException");
} catch (MatrixDimensionMismatchException ex) {
// expected
}
}
@Test
public void testGetColumn() {
RealMatrix m = new Array2DRowRealMatrix(subTestData);
double[] mColumn1 = columnToArray(subColumn1);
double[] mColumn3 = columnToArray(subColumn3);
checkArrays(mColumn1, m.getColumn(1));
checkArrays(mColumn3, m.getColumn(3));
try {
m.getColumn(-1);
Assert.fail("Expecting OutOfRangeException");
} catch (OutOfRangeException ex) {
// expected
}
try {
m.getColumn(4);
Assert.fail("Expecting OutOfRangeException");
} catch (OutOfRangeException ex) {
// expected
}
}
@Test
public void testSetColumn() {
RealMatrix m = new Array2DRowRealMatrix(subTestData);
double[] mColumn3 = columnToArray(subColumn3);
Assert.assertTrue(mColumn3[0] != m.getColumn(1)[0]);
m.setColumn(1, mColumn3);
checkArrays(mColumn3, m.getColumn(1));
try {
m.setColumn(-1, mColumn3);
Assert.fail("Expecting OutOfRangeException");
} catch (OutOfRangeException ex) {
// expected
}
try {
m.setColumn(0, new double[5]);
Assert.fail("Expecting MatrixDimensionMismatchException");
} catch (MatrixDimensionMismatchException ex) {
// expected
}
}
private double[] columnToArray(double[][] column) {
double[] data = new double[column.length];
for (int i = 0; i < data.length; ++i) {
data[i] = column[i][0];
}
return data;
}
private void checkArrays(double[] expected, double[] actual) {
Assert.assertEquals(expected.length, actual.length);
for (int i = 0; i < expected.length; ++i) {
Assert.assertEquals(expected[i], actual[i], 0);
}
}
@Test
public void testEqualsAndHashCode() {
Array2DRowRealMatrix m = new Array2DRowRealMatrix(testData);
Array2DRowRealMatrix m1 = (Array2DRowRealMatrix) m.copy();
Array2DRowRealMatrix mt = (Array2DRowRealMatrix) m.transpose();
Assert.assertTrue(m.hashCode() != mt.hashCode());
Assert.assertEquals(m.hashCode(), m1.hashCode());
Assert.assertEquals(m, m);
Assert.assertEquals(m, m1);
Assert.assertFalse(m.equals(null));
Assert.assertFalse(m.equals(mt));
Assert.assertFalse(m.equals(new Array2DRowRealMatrix(bigSingular)));
}
@Test
public void testToString() {
Array2DRowRealMatrix m = new Array2DRowRealMatrix(testData);
Assert.assertEquals("Array2DRowRealMatrix{{1.0,2.0,3.0},{2.0,5.0,3.0},{1.0,0.0,8.0}}",
m.toString());
m = new Array2DRowRealMatrix();
Assert.assertEquals("Array2DRowRealMatrix{}",
m.toString());
}
@Test
public void testSetSubMatrix() {
Array2DRowRealMatrix m = new Array2DRowRealMatrix(testData);
m.setSubMatrix(detData2,1,1);
RealMatrix expected = MatrixUtils.createRealMatrix
(new double[][] {{1.0,2.0,3.0},{2.0,1.0,3.0},{1.0,2.0,4.0}});
Assert.assertEquals(expected, m);
m.setSubMatrix(detData2,0,0);
expected = MatrixUtils.createRealMatrix
(new double[][] {{1.0,3.0,3.0},{2.0,4.0,3.0},{1.0,2.0,4.0}});
Assert.assertEquals(expected, m);
m.setSubMatrix(testDataPlus2,0,0);
expected = MatrixUtils.createRealMatrix
(new double[][] {{3.0,4.0,5.0},{4.0,7.0,5.0},{3.0,2.0,10.0}});
Assert.assertEquals(expected, m);
// dimension overflow
try {
m.setSubMatrix(testData,1,1);
Assert.fail("expecting OutOfRangeException");
} catch (OutOfRangeException e) {
// expected
}
// dimension underflow
try {
m.setSubMatrix(testData,-1,1);
Assert.fail("expecting OutOfRangeException");
} catch (OutOfRangeException e) {
// expected
}
try {
m.setSubMatrix(testData,1,-1);
Assert.fail("expecting OutOfRangeException");
} catch (OutOfRangeException e) {
// expected
}
// null
try {
m.setSubMatrix(null,1,1);
Assert.fail("expecting NullArgumentException");
} catch (NullArgumentException e) {
// expected
}
Array2DRowRealMatrix m2 = new Array2DRowRealMatrix();
try {
m2.setSubMatrix(testData,0,1);
Assert.fail("expecting MathIllegalStateException");
} catch (MathIllegalStateException e) {
// expected
}
try {
m2.setSubMatrix(testData,1,0);
Assert.fail("expecting MathIllegalStateException");
} catch (MathIllegalStateException e) {
// expected
}
// ragged
try {
m.setSubMatrix(new double[][] {{1}, {2, 3}}, 0, 0);
Assert.fail("expecting MathIllegalArgumentException");
} catch (MathIllegalArgumentException e) {
// expected
}
// empty
try {
m.setSubMatrix(new double[][] {{}}, 0, 0);
Assert.fail("expecting MathIllegalArgumentException");
} catch (MathIllegalArgumentException e) {
// expected
}
}
@Test
public void testWalk() {
int rows = 150;
int columns = 75;
RealMatrix m = new Array2DRowRealMatrix(rows, columns);
m.walkInRowOrder(new SetVisitor());
GetVisitor getVisitor = new GetVisitor();
m.walkInOptimizedOrder(getVisitor);
Assert.assertEquals(rows * columns, getVisitor.getCount());
m = new Array2DRowRealMatrix(rows, columns);
m.walkInRowOrder(new SetVisitor(), 1, rows - 2, 1, columns - 2);
getVisitor = new GetVisitor();
m.walkInOptimizedOrder(getVisitor, 1, rows - 2, 1, columns - 2);
Assert.assertEquals((rows - 2) * (columns - 2), getVisitor.getCount());
for (int i = 0; i < rows; ++i) {
Assert.assertEquals(0.0, m.getEntry(i, 0), 0);
Assert.assertEquals(0.0, m.getEntry(i, columns - 1), 0);
}
for (int j = 0; j < columns; ++j) {
Assert.assertEquals(0.0, m.getEntry(0, j), 0);
Assert.assertEquals(0.0, m.getEntry(rows - 1, j), 0);
}
m = new Array2DRowRealMatrix(rows, columns);
m.walkInColumnOrder(new SetVisitor());
getVisitor = new GetVisitor();
m.walkInOptimizedOrder(getVisitor);
Assert.assertEquals(rows * columns, getVisitor.getCount());
m = new Array2DRowRealMatrix(rows, columns);
m.walkInColumnOrder(new SetVisitor(), 1, rows - 2, 1, columns - 2);
getVisitor = new GetVisitor();
m.walkInOptimizedOrder(getVisitor, 1, rows - 2, 1, columns - 2);
Assert.assertEquals((rows - 2) * (columns - 2), getVisitor.getCount());
for (int i = 0; i < rows; ++i) {
Assert.assertEquals(0.0, m.getEntry(i, 0), 0);
Assert.assertEquals(0.0, m.getEntry(i, columns - 1), 0);
}
for (int j = 0; j < columns; ++j) {
Assert.assertEquals(0.0, m.getEntry(0, j), 0);
Assert.assertEquals(0.0, m.getEntry(rows - 1, j), 0);
}
m = new Array2DRowRealMatrix(rows, columns);
m.walkInOptimizedOrder(new SetVisitor());
getVisitor = new GetVisitor();
m.walkInRowOrder(getVisitor);
Assert.assertEquals(rows * columns, getVisitor.getCount());
m = new Array2DRowRealMatrix(rows, columns);
m.walkInOptimizedOrder(new SetVisitor(), 1, rows - 2, 1, columns - 2);
getVisitor = new GetVisitor();
m.walkInRowOrder(getVisitor, 1, rows - 2, 1, columns - 2);
Assert.assertEquals((rows - 2) * (columns - 2), getVisitor.getCount());
for (int i = 0; i < rows; ++i) {
Assert.assertEquals(0.0, m.getEntry(i, 0), 0);
Assert.assertEquals(0.0, m.getEntry(i, columns - 1), 0);
}
for (int j = 0; j < columns; ++j) {
Assert.assertEquals(0.0, m.getEntry(0, j), 0);
Assert.assertEquals(0.0, m.getEntry(rows - 1, j), 0);
}
m = new Array2DRowRealMatrix(rows, columns);
m.walkInOptimizedOrder(new SetVisitor());
getVisitor = new GetVisitor();
m.walkInColumnOrder(getVisitor);
Assert.assertEquals(rows * columns, getVisitor.getCount());
m = new Array2DRowRealMatrix(rows, columns);
m.walkInOptimizedOrder(new SetVisitor(), 1, rows - 2, 1, columns - 2);
getVisitor = new GetVisitor();
m.walkInColumnOrder(getVisitor, 1, rows - 2, 1, columns - 2);
Assert.assertEquals((rows - 2) * (columns - 2), getVisitor.getCount());
for (int i = 0; i < rows; ++i) {
Assert.assertEquals(0.0, m.getEntry(i, 0), 0);
Assert.assertEquals(0.0, m.getEntry(i, columns - 1), 0);
}
for (int j = 0; j < columns; ++j) {
Assert.assertEquals(0.0, m.getEntry(0, j), 0);
Assert.assertEquals(0.0, m.getEntry(rows - 1, j), 0);
}
}
@Test
public void testSerial() {
Array2DRowRealMatrix m = new Array2DRowRealMatrix(testData);
Assert.assertEquals(m,TestUtils.serializeAndRecover(m));
}
private static class SetVisitor extends DefaultRealMatrixChangingVisitor {
@Override
public double visit(int i, int j, double value) {
return i + j / 1024.0;
}
}
private static class GetVisitor extends DefaultRealMatrixPreservingVisitor {
private int count = 0;
@Override
public void visit(int i, int j, double value) {
++count;
Assert.assertEquals(i + j / 1024.0, value, 0.0);
}
public int getCount() {
return count;
}
}
//--------------- -----------------Protected methods
/** extracts the l and u matrices from compact lu representation */
protected void splitLU(RealMatrix lu, double[][] lowerData, double[][] upperData) {
if (!lu.isSquare()) {
throw new NonSquareMatrixException(lu.getRowDimension(), lu.getColumnDimension());
}
if (lowerData.length != lowerData[0].length) {
throw new DimensionMismatchException(lowerData.length, lowerData[0].length);
}
if (upperData.length != upperData[0].length) {
throw new DimensionMismatchException(upperData.length, upperData[0].length);
}
if (lowerData.length != upperData.length) {
throw new DimensionMismatchException(lowerData.length, upperData.length);
}
if (lowerData.length != lu.getRowDimension()) {
throw new DimensionMismatchException(lowerData.length, lu.getRowDimension());
}
int n = lu.getRowDimension();
for (int i = 0; i < n; i++) {
for (int j = 0; j < n; j++) {
if (j < i) {
lowerData[i][j] = lu.getEntry(i, j);
upperData[i][j] = 0d;
} else if (i == j) {
lowerData[i][j] = 1d;
upperData[i][j] = lu.getEntry(i, j);
} else {
lowerData[i][j] = 0d;
upperData[i][j] = lu.getEntry(i, j);
}
}
}
}
/** Returns the result of applying the given row permutation to the matrix */
protected RealMatrix permuteRows(RealMatrix matrix, int[] permutation) {
if (!matrix.isSquare()) {
throw new NonSquareMatrixException(matrix.getRowDimension(),
matrix.getColumnDimension());
}
if (matrix.getRowDimension() != permutation.length) {
throw new DimensionMismatchException(matrix.getRowDimension(), permutation.length);
}
int n = matrix.getRowDimension();
int m = matrix.getColumnDimension();
double out[][] = new double[m][n];
for (int i = 0; i < n; i++) {
for (int j = 0; j < m; j++) {
out[i][j] = matrix.getEntry(permutation[i], j);
}
}
return new Array2DRowRealMatrix(out);
}
// /** Useful for debugging */
// private void dumpMatrix(RealMatrix m) {
// for (int i = 0; i < m.getRowDimension(); i++) {
// String os = "";
// for (int j = 0; j < m.getColumnDimension(); j++) {
// os += m.getEntry(i, j) + " ";
// }
// System.out.println(os);
// }
// }
}