DefaultReflexActions.java

/**
* The contents of this file are subject to the Mozilla Public License
* Version 1.1 (the "License"); you may not use this file except in
* compliance with the License. You may obtain a copy of the License at
* http://www.mozilla.org/MPL/
*
* Software distributed under the License is distributed on an "AS IS"
* basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the
* License for the specific language governing rights and limitations under
* the License.
*
* The Original Code is OpenELIS code.
*
* Copyright (C) CIRG, University of Washington, Seattle WA.  All Rights Reserved.
*
*/
package us.mn.state.health.lims.testreflex.action.util;

import org.apache.commons.validator.GenericValidator;
import us.mn.state.health.lims.analyte.dao.AnalyteDAO;
import us.mn.state.health.lims.analyte.daoimpl.AnalyteDAOImpl;
import us.mn.state.health.lims.analyte.valueholder.Analyte;
import us.mn.state.health.lims.dictionary.dao.DictionaryDAO;
import us.mn.state.health.lims.dictionary.daoimpl.DictionaryDAOImpl;
import us.mn.state.health.lims.dictionary.valueholder.Dictionary;
import us.mn.state.health.lims.result.valueholder.Result;
import us.mn.state.health.lims.scriptlet.valueholder.Scriptlet;

import java.util.HashMap;
import java.util.List;
import java.util.Map;

public class DefaultReflexActions extends ReflexAction {


	private static final String HIV_N_SCRIPT = "HIV N";
	private static final String HIV_INDETERMINATE_SCRIPT = "HIV Indeterminate";
	private static final String HIV_POSITIVE_SCRIPT = "HIV Positive";

	private static Analyte ANALYTE_CONCLUSION;
	private static Map<String, String> hivStatusToDictionaryIDMap;


	static {

		hivStatusToDictionaryIDMap = new HashMap<String, String>();

		DictionaryDAO dictionaryDAO = new DictionaryDAOImpl();

		List<Dictionary> dictionaryList = dictionaryDAO.getDictionaryEntrysByCategoryNameLocalizedSort("HIVResult");

		for (Dictionary dictionary : dictionaryList) {
			if (dictionary.getDictEntry().equals("Positive")) {
				hivStatusToDictionaryIDMap.put( HIV_POSITIVE_SCRIPT, dictionary.getId() );
			} else if (dictionary.getDictEntry().equals("Negative")) {
				hivStatusToDictionaryIDMap.put( HIV_N_SCRIPT, dictionary.getId() );
			} else if (dictionary.getDictEntry().equals("Indeterminate")) {
				hivStatusToDictionaryIDMap.put( HIV_INDETERMINATE_SCRIPT, dictionary.getId() );
			}
		}

		AnalyteDAO analyteDAO = new AnalyteDAOImpl();
		Analyte analyte = new Analyte();
		analyte.setAnalyteName("Conclusion");
		ANALYTE_CONCLUSION = analyteDAO.getAnalyteByName(analyte, false);
	}

	@Override
	protected void handleScriptletAction(Scriptlet scriptlet) {
		if (scriptlet != null && INTERPERET_TYPE.equals(scriptlet.getCodeType())) {
			String action = scriptlet.getCodeSource();

			if (GenericValidator.isBlankOrNull(action)) {
				return;
			}

			if (action.equals(HIV_INDETERMINATE_SCRIPT) || action.equals(HIV_N_SCRIPT) || action.equals(HIV_POSITIVE_SCRIPT) ) {
				addHIVConclusion(action);
			}
		}
	}

	private void addHIVConclusion(String action) {

		finalResult = new Result();
		finalResult.setValue( hivStatusToDictionaryIDMap.get( action ) );
		finalResult.setResultType("D");
		finalResult.setIsReportable("T");
		finalResult.setAnalyte(ANALYTE_CONCLUSION);
	}
}