SPEFormMapper.java

/**
 * The contents of this file are subject to the Mozilla Public License
 * Version 1.1 (the "License"); you may not use this file except in
 * compliance with the License. You may obtain a copy of the License at
 * http://www.mozilla.org/MPL/
 * 
 * Software distributed under the License is distributed on an "AS IS"
 * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the
 * License for the specific language governing rights and limitations under
 * the License.
 * 
 * The Original Code is OpenELIS code.
 * 
 * Copyright (C) The Minnesota Department of Health.  All Rights Reserved.
 *
 * Contributor(s): CIRG, University of Washington, Seattle WA.
 */
package us.mn.state.health.lims.sample.util.CI;

import org.apache.commons.collections4.CollectionUtils;
import us.mn.state.health.lims.common.action.BaseActionForm;
import us.mn.state.health.lims.common.util.StringUtil;
import us.mn.state.health.lims.test.valueholder.Test;

import java.util.ArrayList;
import java.util.List;

public class SPEFormMapper extends ARVFormMapper implements IProjectFormMapper {

	private final String projectCode = StringUtil.getMessageForKey("sample.entry.project.LSPE");

	public SPEFormMapper(String projectFormId, BaseActionForm dynaForm) {
		super(projectFormId, dynaForm);
	}

	public String getProjectCode() {
		return this.projectCode;
	}

	public String getOrganizationId() {
		// no organization id for Special Request
		return null;
	}

	@Override
	public List<Test> getDryTubeTests() {
		List<Test> testList = new ArrayList<Test>();

		if (projectData.getSerologyHIVTest()) {
            CollectionUtils.addIgnoreNull(testList, createTest("Vironostika", true ));
			CollectionUtils.addIgnoreNull(testList, createTest("Murex", true));
			CollectionUtils.addIgnoreNull(testList, createTest("Integral", true ));
        }

        if (projectData.getMurexTest()) {
			CollectionUtils.addIgnoreNull(testList, createTest("Murex", true ));
        }
        if (projectData.getIntegralTest()) {
			CollectionUtils.addIgnoreNull(testList, createTest("Integral", true ));
		}
        if (projectData.getVironostikaTest()) {
            CollectionUtils.addIgnoreNull(testList, createTest("Vironostika", true ));
        }
        if (projectData.getGenieIITest()) {
			CollectionUtils.addIgnoreNull(testList, createTest("Genie II", true ));
        }
        if (projectData.getGenieII100Test()) {
            CollectionUtils.addIgnoreNull(testList, createTest("Genie II 100", true ));
        }
        if (projectData.getGenieII10Test()) {
            CollectionUtils.addIgnoreNull(testList, createTest("Genie II 10", true));
        }
        if (projectData.getWB1Test()) {
            CollectionUtils.addIgnoreNull(testList, createTest("Western Blot 1", true));
        }
        if (projectData.getWB2Test()) {
            CollectionUtils.addIgnoreNull(testList, createTest("Western Blot 2", true ));
        }
        if (projectData.getP24AgTest()) {
			CollectionUtils.addIgnoreNull(testList, createTest("p24 Ag", true ));
        }
        if (projectData.getCreatinineTest()) {
            CollectionUtils.addIgnoreNull(testList, createTest("Créatininémie", true ));
        }
        if (projectData.getGlycemiaTest()) {
			CollectionUtils.addIgnoreNull(testList, createTest("Glycémie", true ));
		}

        if (projectData.getTransaminaseTest()) {
            CollectionUtils.addIgnoreNull(testList, createTest("Transaminases ALTL", true));
            CollectionUtils.addIgnoreNull(testList, createTest("Transaminases ASTL", true ));
		} else {
			if (projectData.getTransaminaseALTLTest()) {
                CollectionUtils.addIgnoreNull(testList, createTest("Transaminases ALTL", true ));
			}
			if (projectData.getTransaminaseASTLTest()) {
                CollectionUtils.addIgnoreNull(testList, createTest("Transaminases ASTL", true ));
			}
		}
		return testList;
	}

	@Override
	public List<Test> getEDTATubeTests(BaseActionForm dynaForm) {
		List<Test> testList = new ArrayList<Test>();

        if (projectData.getNfsTest()) {
			CollectionUtils.addIgnoreNull(testList, createTest("GB", true));
			CollectionUtils.addIgnoreNull(testList, createTest("Neut %", true));
			CollectionUtils.addIgnoreNull(testList, createTest("Lymph %", true));
			CollectionUtils.addIgnoreNull(testList, createTest("Mono %", true ));
			CollectionUtils.addIgnoreNull(testList, createTest("Eo %", true));
			CollectionUtils.addIgnoreNull(testList, createTest("Baso %", true ));
			CollectionUtils.addIgnoreNull(testList, createTest("GR", true ));
			CollectionUtils.addIgnoreNull(testList, createTest("Hb", true ));
			CollectionUtils.addIgnoreNull(testList, createTest("HCT", true ));
			CollectionUtils.addIgnoreNull(testList, createTest("VGM", true ));
			CollectionUtils.addIgnoreNull(testList, createTest("TCMH", true ));
			CollectionUtils.addIgnoreNull(testList, createTest("CCMH", true ));
			CollectionUtils.addIgnoreNull(testList, createTest("PLQ", true));
        }

        if (projectData.getGbTest()) {
			CollectionUtils.addIgnoreNull(testList, createTest("GB", true));
        }
        if (projectData.getNeutTest()) {
			CollectionUtils.addIgnoreNull(testList, createTest("Neut %", true ));
        }
        if (projectData.getLymphTest()) {
			CollectionUtils.addIgnoreNull(testList, createTest("Lymph %", true));
        }
        if (projectData.getMonoTest()) {
			CollectionUtils.addIgnoreNull(testList, createTest("Mono %", true));
        }
        if (projectData.getEoTest()) {
			CollectionUtils.addIgnoreNull(testList, createTest("Eo %", true));
        }
        if (projectData.getBasoTest()) {
			CollectionUtils.addIgnoreNull(testList, createTest("Baso %", true));
        }
        if (projectData.getGrTest()) {
			CollectionUtils.addIgnoreNull(testList, createTest("GR", true));
        }
        if (projectData.getHbTest()) {
			CollectionUtils.addIgnoreNull(testList, createTest("Hb", true));
        }
        if (projectData.getHctTest()) {
			CollectionUtils.addIgnoreNull(testList, createTest("HCT", true));
        }
        if (projectData.getVgmTest()) {
			CollectionUtils.addIgnoreNull(testList, createTest("VGM", true));
        }
        if (projectData.getTcmhTest()) {
			CollectionUtils.addIgnoreNull(testList, createTest("TCMH", true));
        }
        if (projectData.getCcmhTest()) {
			CollectionUtils.addIgnoreNull(testList, createTest("CCMH", true));
        }
        if (projectData.getPlqTest()) {
			CollectionUtils.addIgnoreNull(testList, createTest("PLQ", true ));
        }
        if (projectData.getCd4cd8Test()) {
            CollectionUtils.addIgnoreNull(testList, createTest("CD3 percentage count", true));
            CollectionUtils.addIgnoreNull(testList, createTest("CD4 percentage count", true ));
        }
        if (projectData.getCd3CountTest()) {
            CollectionUtils.addIgnoreNull(testList, createTest("CD3 percentage count", true ));
        }
        if (projectData.getCd4CountTest()) {
            CollectionUtils.addIgnoreNull(testList, createTest("CD4 percentage count", true ));
        }

        if (projectData.getViralLoadTest()) {
            CollectionUtils.addIgnoreNull(testList, createTest("Viral Load", true ));
        }
        if (projectData.getGenotypingTest()) {
            CollectionUtils.addIgnoreNull(testList, createTest("Génotypage", true ));
		}

		return testList;
	}

}