RetroCIPatientAssociatedReport.java

/**
 * The contents of this file are subject to the Mozilla Public License
 * Version 1.1 (the "License"); you may not use this file except in
 * compliance with the License. You may obtain a copy of the License at
 * http://www.mozilla.org/MPL/ 
 * 
 * Software distributed under the License is distributed on an "AS IS"
 * basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the
 * License for the specific language governing rights and limitations under
 * the License.
 * 
 * The Original Code is OpenELIS code.
 * 
 * Copyright (C) ITECH, University of Washington, Seattle WA.  All Rights Reserved.
 *
 */
package us.mn.state.health.lims.reports.action.implementation;

import java.lang.reflect.InvocationTargetException;
import java.util.ArrayList;
import java.util.List;

import org.apache.commons.beanutils.PropertyUtils;

import us.mn.state.health.lims.common.action.BaseActionForm;
import us.mn.state.health.lims.common.services.QAService;
import us.mn.state.health.lims.common.util.StringUtil;
import us.mn.state.health.lims.observationhistory.dao.ObservationHistoryDAO;
import us.mn.state.health.lims.observationhistory.daoimpl.ObservationHistoryDAOImpl;
import us.mn.state.health.lims.observationhistory.valueholder.ObservationHistory;
import us.mn.state.health.lims.observationhistorytype.ObservationHistoryTypeMap;
import us.mn.state.health.lims.patient.valueholder.Patient;
import us.mn.state.health.lims.sample.util.CI.BaseProjectFormMapper;
import us.mn.state.health.lims.sample.valueholder.Sample;
import us.mn.state.health.lims.samplehuman.daoimpl.SampleHumanDAOImpl;

public class RetroCIPatientAssociatedReport extends CollectionReport implements IReportParameterSetter {

	private ObservationHistoryDAO ohDAO = new ObservationHistoryDAOImpl();

	@Override
	public void setRequestParameters(BaseActionForm dynaForm) {
		try {
			PropertyUtils.setProperty(dynaForm, "reportName", StringUtil.getMessageForKey("patient.report.associated.name"));
			PropertyUtils.setProperty(dynaForm, "usePatientNumberDirect", Boolean.TRUE);
		} catch (IllegalAccessException e) {
			e.printStackTrace();
		} catch (InvocationTargetException e) {
			e.printStackTrace();
		} catch (NoSuchMethodException e) {
			e.printStackTrace();
		}
	}

	@Override
	protected List<byte[]> generateReports() {
		List<byte[]> byteList = new ArrayList<byte[]>();

		Patient patient = getPatient();
		
		if (patient != null) {
			String formNameId = ObservationHistoryTypeMap.getInstance().getIDForType("projectFormName");
			List<Sample> samples = new SampleHumanDAOImpl().getSamplesForPatient(patient.getId());

			for (Sample sample : samples) {
				List<ObservationHistory> projects = ohDAO.getAll(patient, sample, formNameId);
				System.out.println("\n" + sample.getAccessionNumber());
				if (!projects.isEmpty()) {
					setProperty("accessionDirect", sample.getAccessionNumber());

					if ("InitialARV_Id".equals(projects.get(0).getValue())) {
						byteList.add(createReport("patientARVInitial1"));
						byteList.add(createReport("patientARVInitial2"));
					} else if ("FollowUpARV_Id".equals(projects.get(0).getValue())) {
						byteList.add(createReport("patientARVFollowup1"));
						byteList.add(createReport("patientARVFollowup2"));
					} else if ("RTN_Id".equals(projects.get(0).getValue())) {
						// no-op
					} else if ("EID_Id".equals(projects.get(0).getValue())) {
						byteList.add(createReport("patientEID1"));
						byteList.add(createReport("patientEID2"));
					} else if ("Indeterminate_Id".equals(projects.get(0).getValue())) {
						byteList.add(createReport("patientIndeterminate1"));
						byteList.add(createReport("patientIndeterminate2"));
					} else if ("Special_Request_Id".equals(projects.get(0).getValue())) {
						byteList.add(createReport("patientSpecialReport"));
					}
				}

				if (QAService.isOrderNonConforming(sample)) {
					setProperty("lowerDateRange", sample.getReceivedDateForDisplay());
					byteList.add(createReport("retroCINonConformityByDate"));
				}

				if (isUnderInvestigation(sample)) {
					setProperty("lowerDateRange", sample.getReceivedDateForDisplay());
					byteList.add(createReport("retroCIFollowupRequiredByLocation"));
				}
			}
		}
		return byteList;
	}


	private void setProperty(String key, String value) {
		try {
			PropertyUtils.setProperty(dynaForm, key, value);
		} catch (IllegalAccessException e) {
			e.printStackTrace();
		} catch (InvocationTargetException e) {
			e.printStackTrace();
		} catch (NoSuchMethodException e) {
			e.printStackTrace();
		}
	}

	private boolean isUnderInvestigation(Sample sample) {
		String entryUnderInvestigationQuestion = getOptionalObservationHistory(sample, ObservationHistoryTypeMap.getInstance().getIDForType("underInvestigation"));
		return BaseProjectFormMapper.YES_ANSWERS.contains(entryUnderInvestigationQuestion);
	}

	private String getOptionalObservationHistory(Sample sample, String ohTypeId) {
		List<ObservationHistory> oh = ohDAO.getAll(null, sample, ohTypeId);
		if (oh == null || oh.size() == 0)
			return null;
		return oh.get(0).getValue();
	}
}