/**
* The contents of this file are subject to the Mozilla Public License
* Version 1.1 (the "License"); you may not use this file except in
* compliance with the License. You may obtain a copy of the License at
* http://www.mozilla.org/MPL/
*
* Software distributed under the License is distributed on an "AS IS"
* basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the
* License for the specific language governing rights and limitations under
* the License.
*
* The Original Code is OpenELIS code.
*
* Copyright (C) The Minnesota Department of Health. All Rights Reserved.
*
* Contributor(s): CIRG, University of Washington, Seattle WA.
*/
package us.mn.state.health.lims.sampleproject.daoimpl;
import java.sql.Date;
import java.util.ArrayList;
import java.util.List;
import org.apache.commons.beanutils.PropertyUtils;
import org.hibernate.Query;
import us.mn.state.health.lims.audittrail.dao.AuditTrailDAO;
import us.mn.state.health.lims.audittrail.daoimpl.AuditTrailDAOImpl;
import us.mn.state.health.lims.common.action.IActionConstants;
import us.mn.state.health.lims.common.daoimpl.BaseDAOImpl;
import us.mn.state.health.lims.common.exception.LIMSRuntimeException;
import us.mn.state.health.lims.common.log.LogEvent;
import us.mn.state.health.lims.hibernate.HibernateUtil;
import us.mn.state.health.lims.sampleorganization.valueholder.SampleOrganization;
import us.mn.state.health.lims.sampleproject.dao.SampleProjectDAO;
import us.mn.state.health.lims.sampleproject.valueholder.SampleProject;
/**
* $Header$
*
* @author Hung Nguyen
* @date created 08/04/2006
* @version $Revision$
*/
public class SampleProjectDAOImpl extends BaseDAOImpl implements SampleProjectDAO {
public void deleteData(List sampleProjs) throws LIMSRuntimeException {
//add to audit trail
try {
AuditTrailDAO auditDAO = new AuditTrailDAOImpl();
for (int i = 0; i < sampleProjs.size(); i++) {
SampleProject data = (SampleProject)sampleProjs.get(i);
SampleProject oldData = (SampleProject)readSampleProject(data.getId());
SampleProject newData = new SampleProject();
String sysUserId = data.getSysUserId();
String event = IActionConstants.AUDIT_TRAIL_DELETE;
//bugzilla 2104 change to SAMPLE_PROJECTS instead of SAMPLE_PROJECT
String tableName = "SAMPLE_PROJECTS";
auditDAO.saveHistory(newData,oldData,sysUserId,event,tableName);
}
} catch (Exception e) {
//bugzilla 2154
LogEvent.logError("SampleProjectDAOImpl","AuditTrail deleteData()",e.toString());
throw new LIMSRuntimeException("Error in SampleProject AuditTrail deleteData()", e);
}
try {
for (int i = 0; i < sampleProjs.size(); i++) {
SampleProject data = (SampleProject) sampleProjs.get(i);
//bugzilla 2206
data = (SampleProject)readSampleProject(data.getId());
HibernateUtil.getSession().delete(data);
HibernateUtil.getSession().flush();
HibernateUtil.getSession().clear();
}
} catch (Exception e) {
//bugzilla 2154
LogEvent.logError("SampleProjectDAOImpl","deleteData()",e.toString());
throw new LIMSRuntimeException("Error in SampleProject deleteData()", e);
}
}
public boolean insertData(SampleProject sampleProj) throws LIMSRuntimeException {
try {
String id = (String)HibernateUtil.getSession().save(sampleProj);
sampleProj.setId(id);
//bugzilla 1824 inserts will be logged in history table
AuditTrailDAO auditDAO = new AuditTrailDAOImpl();
String sysUserId = sampleProj.getSysUserId();
//bugzilla 2104 change to SAMPLE_PROJECTS instead of SAMPLE_PROJECT
String tableName = "SAMPLE_PROJECTS";
auditDAO.saveNewHistory(sampleProj,sysUserId,tableName);
HibernateUtil.getSession().flush();
HibernateUtil.getSession().clear();
} catch (Exception e) {
//bugzilla 2154
LogEvent.logError("SampleProjectDAOImpl","insertData()",e.toString());
throw new LIMSRuntimeException("Error in SampleProject insertData()", e);
}
return true;
}
public void updateData(SampleProject sampleProj) throws LIMSRuntimeException {
SampleProject oldData = (SampleProject)readSampleProject(sampleProj.getId());
SampleProject newData = sampleProj;
//add to audit trail
try {
AuditTrailDAO auditDAO = new AuditTrailDAOImpl();
String sysUserId = sampleProj.getSysUserId();
String event = IActionConstants.AUDIT_TRAIL_UPDATE;
//bugzilla 2104 change to SAMPLE_PROJECTS instead of SAMPLE_PROJECT
String tableName = "SAMPLE_PROJECTS";
auditDAO.saveHistory(newData,oldData,sysUserId,event,tableName);
} catch (Exception e) {
//bugzilla 2154
LogEvent.logError("SampleProjectDAOImpl","AuditTrail updateData()",e.toString());
throw new LIMSRuntimeException("Error in SampleProject AuditTrail updateData()", e);
}
try {
HibernateUtil.getSession().merge(sampleProj);
HibernateUtil.getSession().flush();
HibernateUtil.getSession().clear();
HibernateUtil.getSession().evict(sampleProj);
HibernateUtil.getSession().refresh(sampleProj);
} catch (Exception e) {
//bugzilla 2154
LogEvent.logError("SampleProjectDAOImpl","updateData()",e.toString());
throw new LIMSRuntimeException("Error in SampleProject updateData()", e);
}
}
public void getData(SampleProject sampleProj) throws LIMSRuntimeException {
try {
SampleProject data = (SampleProject)HibernateUtil.getSession().get(SampleProject.class, sampleProj.getId());
HibernateUtil.getSession().flush();
HibernateUtil.getSession().clear();
if (data != null) {
PropertyUtils.copyProperties(sampleProj, data);
} else {
sampleProj.setId(null);
}
} catch (Exception e) {
//bugzilla 2154
LogEvent.logError("SampleProjectDAOImpl","getData()",e.toString());
throw new LIMSRuntimeException("Error in SampleProject getData()", e);
}
}
public SampleProject readSampleProject(String idString) {
SampleProject sp = null;
try {
sp = (SampleProject)HibernateUtil.getSession().get(SampleProject.class, idString);
HibernateUtil.getSession().flush();
HibernateUtil.getSession().clear();
} catch (Exception e) {
//bugzilla 2154
LogEvent.logError("SampleProjectDAOImpl","readSampleProject()",e.toString());
throw new LIMSRuntimeException("Error in SampleProject readSampleProject()", e);
}
return sp;
}
// AIS - bugzilla 1851
//Diane - bugzilla 1920
public List getSampleProjectsByProjId(String projId) throws LIMSRuntimeException {
List sampleProjects = new ArrayList();
try {
String sql = "from SampleProject sp where sp.project = :param";
Query query = HibernateUtil.getSession().createQuery(sql);
query.setParameter("param", projId);
sampleProjects = query.list();
HibernateUtil.getSession().flush();
HibernateUtil.getSession().clear();
return sampleProjects;
} catch (Exception e) {
//bugzilla 2154
LogEvent.logError("SampleProjectDAOImpl","getSampleProjectsByProjId()",e.toString());
throw new LIMSRuntimeException(
"Error in SampleProjectDAO getSampleProjectsByProjId()", e);
}
}
@SuppressWarnings("unchecked")
public SampleProject getSampleProjectBySampleId(String id) throws LIMSRuntimeException {
List<SampleProject> sampleProjects = null;
try {
String sql = "from SampleProject sp where sp.sample.id = :sampleId";
Query query = HibernateUtil.getSession().createQuery(sql);
query.setInteger("sampleId", Integer.parseInt(id));
sampleProjects = query.list();
closeSession();
} catch (Exception e) {
handleException(e, "getSampleProjectBySampleId");
}
return sampleProjects.isEmpty() ? null : sampleProjects.get(0);
}
@SuppressWarnings("unchecked")
@Override
public List<SampleProject> getByOrganizationProjectAndReceivedOnRange(String organizationId, String projectName, Date lowReceivedDate, Date highReceivedDate) throws LIMSRuntimeException {
List<SampleProject> list = null;
try {
String sql = "FROM SampleProject as sp " +
" WHERE sp.project.projectName = :projectName AND sp.sample.id IN (SELECT so.sample.id FROM SampleOrganization as so WHERE so.sample.receivedTimestamp >= :dateLow AND so.sample.receivedTimestamp <= :dateHigh " +
" AND so.organization.id = :organizationId ) ";
Query query = HibernateUtil.getSession().createQuery(sql);
query.setString("projectName", projectName);
query.setDate("dateLow", lowReceivedDate);
query.setDate("dateHigh", highReceivedDate);
query.setInteger("organizationId", Integer.valueOf(organizationId));
list = query.list();
} catch (Exception e) {
LogEvent.logError("SampleDAOImpl", "getSamplesByOrganiztionAndReceivedOnRange()", e.toString());
throw new LIMSRuntimeException("Exception occurred in SampleNumberDAOImpl.getByOrganizationProjectAndReceivedOnRange", e);
}
return list;
}
}