/**
* The contents of this file are subject to the Mozilla Public License
* Version 1.1 (the "License"); you may not use this file except in
* compliance with the License. You may obtain a copy of the License at
* http://www.mozilla.org/MPL/
*
* Software distributed under the License is distributed on an "AS IS"
* basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the
* License for the specific language governing rights and limitations under
* the License.
*
* The Original Code is OpenELIS code.
*
* Copyright (C) The Minnesota Department of Health. All Rights Reserved.
*/
package us.mn.state.health.lims.testmanagement.action;
import java.util.ArrayList;
import java.util.Collections;
import java.util.Iterator;
import java.util.List;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.apache.commons.beanutils.PropertyUtils;
import org.apache.struts.action.ActionForm;
import org.apache.struts.action.ActionForward;
import org.apache.struts.action.ActionMapping;
import us.mn.state.health.lims.analysis.dao.AnalysisDAO;
import us.mn.state.health.lims.analysis.daoimpl.AnalysisDAOImpl;
import us.mn.state.health.lims.analysis.valueholder.Analysis;
import us.mn.state.health.lims.common.action.BaseAction;
import us.mn.state.health.lims.common.action.BaseActionForm;
import us.mn.state.health.lims.common.action.IActionConstants;
import us.mn.state.health.lims.common.util.StringUtil;
import us.mn.state.health.lims.login.dao.UserTestSectionDAO;
import us.mn.state.health.lims.login.daoimpl.UserTestSectionDAOImpl;
import us.mn.state.health.lims.panel.dao.PanelDAO;
import us.mn.state.health.lims.panel.daoimpl.PanelDAOImpl;
import us.mn.state.health.lims.panel.valueholder.Panel;
import us.mn.state.health.lims.panelitem.dao.PanelItemDAO;
import us.mn.state.health.lims.panelitem.daoimpl.PanelItemDAOImpl;
import us.mn.state.health.lims.panelitem.valueholder.PanelItem;
import us.mn.state.health.lims.sample.dao.SampleDAO;
import us.mn.state.health.lims.sample.daoimpl.SampleDAOImpl;
import us.mn.state.health.lims.sample.valueholder.Sample;
import us.mn.state.health.lims.sampleitem.dao.SampleItemDAO;
import us.mn.state.health.lims.sampleitem.daoimpl.SampleItemDAOImpl;
import us.mn.state.health.lims.sampleitem.valueholder.SampleItem;
import us.mn.state.health.lims.test.dao.TestDAO;
import us.mn.state.health.lims.test.daoimpl.TestDAOImpl;
import us.mn.state.health.lims.test.valueholder.AssignableTest;
import us.mn.state.health.lims.test.valueholder.AssignableTestComparator;
import us.mn.state.health.lims.test.valueholder.Test;
/**
* @author aiswarya raman
* benzd1 - bugzillas 2223, 2227
* benzd1 - replaced bugzilla 1776 with 1844, 2293
* also cleaned up to conform to naming standards
* also made more efficient (added method to PanelItemDAO to get panelItems by panel instead of looping through all panelItems)
*/
public class TestManagementAddTestPopupAction extends BaseAction {
protected ActionForward performAction(ActionMapping mapping,
ActionForm form, HttpServletRequest request,
HttpServletResponse response) throws Exception {
String forward = FWD_SUCCESS;
request.setAttribute(ALLOW_EDITS_KEY, "true");
BaseActionForm dynaForm = (BaseActionForm) form;
// initialize the form
dynaForm.initialize(mapping);
//Get tests by user system id
//bugzilla 2160
UserTestSectionDAO userTestSectionDAO = new UserTestSectionDAOImpl();
//bugzilla 2291 added onlyTestsFullySetup
List tests = userTestSectionDAO.getAllUserTests(request, true);
//bugzilla 2223 need to filter out (remove) tests that are not setup yet!
TestDAO testDAO = new TestDAOImpl();
List testTypeAssignableTests = new ArrayList();
List panelTypeAssignableTests = new ArrayList();
List assignableTests = new ArrayList();
AssignableTest assignableTest = null;
SampleDAO sampleDAO = new SampleDAOImpl();
SampleItemDAO sampleItemDAO = new SampleItemDAOImpl();
AnalysisDAO analysisDAO = new AnalysisDAOImpl();
PanelDAO panelDAO = new PanelDAOImpl();
PanelItemDAO panelItemDAO = new PanelItemDAOImpl();
Sample sample = new Sample();
SampleItem sampleItem = new SampleItem();
List analyses = new ArrayList();
List selectedTestIds = new ArrayList();
String accessionNumber = request.getParameter(ACCESSION_NUMBER);
sample.setAccessionNumber(accessionNumber);
sampleDAO.getSampleByAccessionNumber(sample);
if (!StringUtil.isNullorNill(sample.getId())) {
//bugzilla 1773 need to store sample not sampleId for use in sorting
sampleItem.setSample(sample);
sampleItemDAO.getDataBySample(sampleItem);
if (sampleItem.getId() != null ){
//bugzilla 2227
//bugzilla 2532 (don't include child tests)
analyses = analysisDAO.getMaxRevisionParentTestAnalysesBySample(sampleItem);
}
}
if (analyses != null) {
// there is one Analysis per Test
for (int i = 0; i < analyses.size(); i++) {
Analysis analysis = (Analysis) analyses.get(i);
Test test = (Test) analysis.getTest();
selectedTestIds.add(test.getId());
}
}
//the tests to select from should not contain already selected tests
for (int i = 0; i < tests.size(); i++) {
Test aTest = (Test)tests.get(i);
if (!selectedTestIds.contains(aTest.getId())) {
if (aTest.getIsActive().equals(IActionConstants.YES) ) {
assignableTest = new AssignableTest(aTest);
testTypeAssignableTests.add(assignableTest);
}
}
}
Collections.sort(testTypeAssignableTests, AssignableTestComparator.TEST_TYPE_DESCRIPTION_COMPARATOR);
List panels = panelDAO.getAllActivePanels();
Iterator panelIterator = panels.iterator();
panels = new ArrayList();
while(panelIterator.hasNext())
{
Panel currentPanel = (Panel) panelIterator.next();
String panelTooltipString = "";
String tooltipString = "";
//bugzilla 2223 - need to remove panelItems pointing to tests not set up
//bugzilla 2291 added onlyTestsFullySetup
List panelItemsForPanel = panelItemDAO.getPanelItemByPanel(currentPanel, true);
//bugzilla 2223 - remove a panel if all of associated tests are not set up yet
if (panelItemsForPanel == null || panelItemsForPanel.size() == 0) {
continue;
}
Iterator panelItemIterator = panelItemsForPanel.iterator();
boolean atLeastOnePanelItemWithSetupTestFound = false;
List listOfAssignableTests = new ArrayList();
while(panelItemIterator.hasNext()) {
PanelItem currentPanelitem = (PanelItem) panelItemIterator.next();
String testName = currentPanelitem.getTestName();
Test panelItemTest = new Test();
panelItemTest.setTestName(testName);
panelItemTest = testDAO.getTestByName(panelItemTest);
//bugzilla 2291
if (null != panelItemTest) {
assignableTest = new AssignableTest(panelItemTest);
//if already selected then just add to tooltip
if (!selectedTestIds.contains(panelItemTest.getId())) {
atLeastOnePanelItemWithSetupTestFound = true;
listOfAssignableTests.add(assignableTest);
}
panelTooltipString = panelTooltipString + assignableTest.getDisplayValue() + "
";
}
}
if ( panelTooltipString.length() > 6 ){
tooltipString = panelTooltipString.substring(0,panelTooltipString.length()-6);
}else{
tooltipString = panelTooltipString;
}
assignableTest = new AssignableTest(currentPanel);
assignableTest.setTooltipText(tooltipString);
Collections.sort(listOfAssignableTests, AssignableTestComparator.TEST_TYPE_NAME_COMPARATOR);
assignableTest.setListOfAssignableTests(listOfAssignableTests);
if (atLeastOnePanelItemWithSetupTestFound) {
panelTypeAssignableTests.add(assignableTest);
}
}
Collections.sort(panelTypeAssignableTests, AssignableTestComparator.PANEL_TYPE_DESCRIPTION_COMPARATOR);
//panel types should sort to the top
assignableTests.addAll(panelTypeAssignableTests);
assignableTests.addAll(testTypeAssignableTests);
PropertyUtils.setProperty(dynaForm, "SelectList", assignableTests);
return mapping.findForward(forward);
}
protected String getPageTitleKey() {
return "quickentry.addTestPopup.title";
}
protected String getPageSubtitleKey() {
return "quickentry.addTestPopup.subtitle";
}
}