/**
* The contents of this file are subject to the Mozilla Public License
* Version 1.1 (the "License"); you may not use this file except in
* compliance with the License. You may obtain a copy of the License at
* http://www.mozilla.org/MPL/
*
* Software distributed under the License is distributed on an "AS IS"
* basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the
* License for the specific language governing rights and limitations under
* the License.
*
* The Original Code is OpenELIS code.
*
* Copyright (C) The Minnesota Department of Health. All Rights Reserved.
*/
package us.mn.state.health.lims.result.action;
import java.sql.Timestamp;
import java.util.List;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.apache.commons.beanutils.PropertyUtils;
import org.apache.struts.Globals;
import org.apache.struts.action.ActionForm;
import org.apache.struts.action.ActionForward;
import org.apache.struts.action.ActionMapping;
import org.apache.struts.action.ActionMessages;
import org.apache.struts.action.ActionRedirect;
import us.mn.state.health.lims.analysis.dao.AnalysisDAO;
import us.mn.state.health.lims.analysis.daoimpl.AnalysisDAOImpl;
import us.mn.state.health.lims.analysis.valueholder.Analysis;
import us.mn.state.health.lims.analysisqaevent.dao.AnalysisQaEventDAO;
import us.mn.state.health.lims.analysisqaevent.daoimpl.AnalysisQaEventDAOImpl;
import us.mn.state.health.lims.analysisqaevent.valueholder.AnalysisQaEvent;
import us.mn.state.health.lims.analysisqaeventaction.dao.AnalysisQaEventActionDAO;
import us.mn.state.health.lims.analysisqaeventaction.daoimpl.AnalysisQaEventActionDAOImpl;
import us.mn.state.health.lims.analysisqaeventaction.valueholder.AnalysisQaEventAction;
import us.mn.state.health.lims.common.action.BaseActionForm;
import us.mn.state.health.lims.common.exception.LIMSRuntimeException;
import us.mn.state.health.lims.common.log.LogEvent;
import us.mn.state.health.lims.common.util.StringUtil;
import us.mn.state.health.lims.common.util.SystemConfiguration;
import us.mn.state.health.lims.common.util.validator.ActionError;
import us.mn.state.health.lims.hibernate.HibernateUtil;
import us.mn.state.health.lims.login.valueholder.UserSessionData;
import us.mn.state.health.lims.note.dao.NoteDAO;
import us.mn.state.health.lims.note.daoimpl.NoteDAOImpl;
import us.mn.state.health.lims.note.valueholder.Note;
import us.mn.state.health.lims.referencetables.valueholder.ReferenceTables;
import us.mn.state.health.lims.result.dao.ResultDAO;
import us.mn.state.health.lims.result.daoimpl.ResultDAOImpl;
import us.mn.state.health.lims.result.valueholder.Result;
import us.mn.state.health.lims.result.valueholder.Test_TestAnalyte;
import us.mn.state.health.lims.sample.dao.SampleDAO;
import us.mn.state.health.lims.sample.daoimpl.SampleDAOImpl;
import us.mn.state.health.lims.sample.valueholder.Sample;
/**
* @author diane benz
* bugzilla 2227 Amended Results
* To change this generated comment
* edit the template variable "typecomment":
* Window>Preferences>Java>Templates. To enable and disable the creation
* of type comments go to Window>Preferences>Java>Code Generation.
*/
public class AmendedResultsEntryUpdateAction extends ResultsEntryBaseAction {
protected ActionForward performAction(ActionMapping mapping,
ActionForm form, HttpServletRequest request,
HttpServletResponse response) throws Exception {
String forward = FWD_SUCCESS;
request.setAttribute(ALLOW_EDITS_KEY, "true");
request.setAttribute(PREVIOUS_DISABLED, "true");
request.setAttribute(NEXT_DISABLED, "true");
String amendedAnalysisId = null;
if (request.getParameter(ANALYSIS_ID) != null) {
amendedAnalysisId = (String) request.getParameter(ANALYSIS_ID);
}
BaseActionForm dynaForm = (BaseActionForm) form;
List testTestAnalytes = (List) dynaForm.get("testTestAnalytes");
String accessionNumber = (String) dynaForm.get("accessionNumber");
Timestamp sampleLastupdated = (Timestamp) dynaForm
.get("sampleLastupdated");
ActionMessages errors = null;
// initialize the form
dynaForm.initialize(mapping);
// 1926 get sysUserId from login module
UserSessionData usd = (UserSessionData)request.getSession().getAttribute(USER_SESSION_DATA);
String sysUserId = String.valueOf(usd.getSystemUserId());
org.hibernate.Transaction tx = HibernateUtil.getSession()
.beginTransaction();
if (!StringUtil.isNullorNill(amendedAnalysisId)) {
ResultDAO resultDAO = new ResultDAOImpl();
AnalysisDAO analysisDAO = new AnalysisDAOImpl();
NoteDAO noteDAO = new NoteDAOImpl();
SampleDAO sampleDAO = new SampleDAOImpl();
AnalysisQaEventDAO analysisQaEventDAO = new AnalysisQaEventDAOImpl();
AnalysisQaEventActionDAO analysisQaEventActionDAO = new AnalysisQaEventActionDAOImpl();
try {
// get old analysis and copy to new one
Analysis analysisToAmend = new Analysis();
analysisToAmend.setId(amendedAnalysisId);
analysisDAO.getData(analysisToAmend);
Analysis amendedAnalysis = new Analysis();
PropertyUtils.copyProperties(amendedAnalysis, analysisToAmend);
amendedAnalysis.setId(null);
amendedAnalysis.setLastupdated(null);
amendedAnalysis.setSysUserId(sysUserId);
String revisionString = analysisToAmend.getRevision();
int revision = 0;
if (!StringUtil.isNullorNill(revisionString)) {
try {
revision =Integer.parseInt(revisionString);
} catch (NumberFormatException nfe) {
//bugzilla 2154
LogEvent.logError("AmendedResultsEntryUpdateAction","performAction()",nfe.toString());
}
}
amendedAnalysis.setRevision(String.valueOf(++revision));
amendedAnalysis.setStatus(SystemConfiguration.getInstance().getAnalysisStatusResultCompleted());
amendedAnalysis.setPrintedDate(null);
//bugzilla 2013 added duplicateCheck parameter
analysisDAO.insertData(amendedAnalysis, false);
//find qa events attached to analysisToAmend and clone them to the amenedAnalysis
AnalysisQaEvent analysisQaEventToAmend = new AnalysisQaEvent();
analysisQaEventToAmend.setAnalysis(analysisToAmend);
List qaEvents = analysisQaEventDAO.getAnalysisQaEventsByAnalysis(analysisQaEventToAmend);
if (qaEvents != null && qaEvents.size() > 0) {
for (int y = 0; y < qaEvents.size(); y++) {
analysisQaEventToAmend = (AnalysisQaEvent)qaEvents.get(y);
AnalysisQaEvent amendedAnalysisQaEvent = new AnalysisQaEvent();
AnalysisQaEventAction analysisQaEventActionToAmend = new AnalysisQaEventAction();
analysisQaEventActionToAmend.setAnalysisQaEvent(analysisQaEventToAmend);
List qaEventActionsToAmend = analysisQaEventActionDAO.getAnalysisQaEventActionsByAnalysisQaEvent(analysisQaEventActionToAmend);
PropertyUtils.copyProperties(amendedAnalysisQaEvent, analysisQaEventToAmend);
amendedAnalysisQaEvent.setId(null);
amendedAnalysisQaEvent.setAnalysis(amendedAnalysis);
amendedAnalysisQaEvent.setLastupdated(null);
amendedAnalysisQaEvent.setSysUserId(sysUserId);
analysisQaEventDAO.insertData(amendedAnalysisQaEvent);
//get actions also
if (qaEventActionsToAmend != null && qaEventActionsToAmend.size() > 0) {
for (int z = 0; z < qaEventActionsToAmend.size(); z++) {
analysisQaEventActionToAmend = (AnalysisQaEventAction)qaEventActionsToAmend.get(z);
AnalysisQaEventAction amendedAnalysisQaEventAction = new AnalysisQaEventAction();
PropertyUtils.copyProperties(amendedAnalysisQaEventAction, analysisQaEventActionToAmend);
amendedAnalysisQaEventAction.setId(null);
amendedAnalysisQaEventAction.setAnalysisQaEvent(amendedAnalysisQaEvent);
amendedAnalysisQaEventAction.setLastupdated(null);
amendedAnalysisQaEventAction.setSysUserId(sysUserId);
analysisQaEventActionDAO.insertData(amendedAnalysisQaEventAction);
}
}
}
}
//create copies of results
List resultsToAmend = resultDAO.getResultsByAnalysis(analysisToAmend);
for (int i = 0; i < resultsToAmend.size(); i++) {
Result resultToAmend = (Result)resultsToAmend.get(i);
Result amendedResult = new Result();
PropertyUtils.copyProperties(amendedResult, resultToAmend);
amendedResult.setId(null);
amendedResult.setAnalysis(amendedAnalysis);
amendedResult.setLastupdated(null);
amendedResult.setSysUserId(sysUserId);
resultDAO.insertData(amendedResult);
//find other analyses on this sample that have this result/analysis as a parent and unlink/link to this one
List childAnalyses = analysisDAO.getAllChildAnalysesByResult(resultToAmend);
for (int j = 0; j < childAnalyses.size(); j++) {
Analysis childAnalysis = (Analysis)childAnalyses.get(j);
childAnalysis.setParentAnalysis(amendedAnalysis);
childAnalysis.setParentResult(amendedResult);
childAnalysis.setSysUserId(sysUserId);
//this is for optimistic locking - we need the correct lastupdated
for (int x = 0; x < testTestAnalytes.size(); x++) {
Test_TestAnalyte test_testAnalyte = (Test_TestAnalyte) testTestAnalytes
.get(x);
Analysis analysis = test_testAnalyte.getAnalysis();
if (analysis.getId().equals(childAnalysis.getId())) {
childAnalysis.setLastupdated(analysis.getLastupdated());
break;
}
}
analysisDAO.updateData(childAnalysis);
}
//create copies of notes (attached to new results)
Note note = new Note();
//bugzilla 2571 go through ReferenceTablesDAO to get reference tables info
ReferenceTables referenceTables = new ReferenceTables();
referenceTables.setId(SystemConfiguration.getInstance().getResultReferenceTableId());
note.setReferenceTables(referenceTables);
note.setReferenceId(resultToAmend.getId());
List notesByResult = noteDAO.getAllNotesByRefIdRefTable(note);
for (int x = 0 ; x < notesByResult.size(); x++) {
Note noteToAmend = (Note)notesByResult.get(x);
Note amendedNote = new Note();
PropertyUtils.copyProperties(amendedNote, noteToAmend);
amendedNote.setId(null);
amendedNote.setReferenceId(amendedResult.getId());
amendedNote.setLastupdated(null);
//per Nancy retain user id of original author of note
// Also!!!! Note needs to have systemUser (for Note mapping) AND sysUserId (for audit trail) set!!!!
amendedNote.setSystemUser(noteToAmend.getSystemUser());
amendedNote.setSysUserId(sysUserId);
noteDAO.insertData(amendedNote);
}
}
//update sample status
Sample sample = sampleDAO.getSampleByAccessionNumber(accessionNumber);
//this is for optimistic locking...(sampleLastupdated was stored in form from initial read)
sample.setLastupdated(sampleLastupdated);
sample.setSysUserId(sysUserId);
sample.setStatus(SystemConfiguration.getInstance().getSampleStatusEntry2Complete());
sampleDAO.updateData(sample);
tx.commit();
} catch (LIMSRuntimeException lre) {
//bugzilla 2154
LogEvent.logError("AmendedResultsEntryUpdateAction","performAction()",lre.toString());
tx.rollback();
errors = new ActionMessages();
ActionError error = null;
if (lre.getException() instanceof org.hibernate.StaleObjectStateException) {
error = new ActionError("errors.OptimisticLockException",
null, null);
} else {
error = new ActionError("errors.InsertException", null,
null);
}
errors.add(ActionMessages.GLOBAL_MESSAGE, error);
saveErrors(request, errors);
request.setAttribute(Globals.ERROR_KEY, errors);
forward = FWD_FAIL;
} finally {
HibernateUtil.closeSession();
}
} else {
forward = FWD_FAIL;
}
return getForward(mapping.findForward(forward), accessionNumber);
}
protected String getPageTitleKey() {
return null;
}
protected String getPageSubtitleKey() {
return null;
}
protected ActionForward getForward(ActionForward forward, String accessionNumber) {
ActionRedirect redirect = new ActionRedirect(forward);
if (!StringUtil.isNullorNill(accessionNumber))
redirect.addParameter(ACCESSION_NUMBER, accessionNumber);
return redirect;
}
}