/**
* The contents of this file are subject to the Mozilla Public License
* Version 1.1 (the "License"); you may not use this file except in
* compliance with the License. You may obtain a copy of the License at
* http://www.mozilla.org/MPL/
*
* Software distributed under the License is distributed on an "AS IS"
* basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the
* License for the specific language governing rights and limitations under
* the License.
*
* The Original Code is OpenELIS code.
*
* Copyright (C) The Minnesota Department of Health. All Rights Reserved.
*/
package us.mn.state.health.lims.testmanagement.action;
import org.apache.commons.beanutils.PropertyUtils;
import org.apache.struts.action.ActionForm;
import org.apache.struts.action.ActionForward;
import org.apache.struts.action.ActionMapping;
import us.mn.state.health.lims.analysis.dao.AnalysisDAO;
import us.mn.state.health.lims.analysis.daoimpl.AnalysisDAOImpl;
import us.mn.state.health.lims.analysis.valueholder.Analysis;
import us.mn.state.health.lims.common.action.BaseAction;
import us.mn.state.health.lims.common.action.BaseActionForm;
import us.mn.state.health.lims.common.action.IActionConstants;
import us.mn.state.health.lims.common.util.DateUtil;
import us.mn.state.health.lims.common.util.StringUtil;
import us.mn.state.health.lims.common.util.SystemConfiguration;
import us.mn.state.health.lims.patient.dao.PatientDAO;
import us.mn.state.health.lims.patient.daoimpl.PatientDAOImpl;
import us.mn.state.health.lims.patient.valueholder.Patient;
import us.mn.state.health.lims.person.dao.PersonDAO;
import us.mn.state.health.lims.person.daoimpl.PersonDAOImpl;
import us.mn.state.health.lims.person.valueholder.Person;
import us.mn.state.health.lims.provider.dao.ProviderDAO;
import us.mn.state.health.lims.provider.daoimpl.ProviderDAOImpl;
import us.mn.state.health.lims.provider.valueholder.Provider;
import us.mn.state.health.lims.sample.dao.SampleDAO;
import us.mn.state.health.lims.sample.daoimpl.SampleDAOImpl;
import us.mn.state.health.lims.sample.valueholder.Sample;
import us.mn.state.health.lims.samplehuman.dao.SampleHumanDAO;
import us.mn.state.health.lims.samplehuman.daoimpl.SampleHumanDAOImpl;
import us.mn.state.health.lims.samplehuman.valueholder.SampleHuman;
import us.mn.state.health.lims.sampleitem.dao.SampleItemDAO;
import us.mn.state.health.lims.sampleitem.daoimpl.SampleItemDAOImpl;
import us.mn.state.health.lims.sampleitem.valueholder.SampleItem;
import us.mn.state.health.lims.sampleorganization.dao.SampleOrganizationDAO;
import us.mn.state.health.lims.sampleorganization.daoimpl.SampleOrganizationDAOImpl;
import us.mn.state.health.lims.sampleorganization.valueholder.SampleOrganization;
import us.mn.state.health.lims.sampleproject.valueholder.SampleProject;
import us.mn.state.health.lims.sourceofsample.valueholder.SourceOfSample;
import us.mn.state.health.lims.statusofsample.dao.StatusOfSampleDAO;
import us.mn.state.health.lims.statusofsample.daoimpl.StatusOfSampleDAOImpl;
import us.mn.state.health.lims.statusofsample.valueholder.StatusOfSample;
import us.mn.state.health.lims.test.valueholder.Test;
import us.mn.state.health.lims.testmanagement.valueholder.TestManagementRoutingSwitchSessionHandler;
import us.mn.state.health.lims.typeofsample.valueholder.TypeOfSample;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import javax.servlet.http.HttpSession;
import java.util.*;
/**
* @author aiswarya raman
*
* To change this generated comment edit the template variable "typecomment":
* Window>Preferences>Java>Templates. To enable and disable the creation of type
* comments go to Window>Preferences>Java>Code Generation.
*
* bugzilla 1774 route from results entry to test management (verification) passing accession number
* added this action in order to use TestVerificationAction as an initializing action that
* sets the session variable IActionConstants.TEST_MANAGEMENT_ROUTING_FROM_RESULTS_ENTRY to false
* bugzilla 1942: status changes
* bugzilla 2053
*/
public class TestVerificationViewAction extends BaseAction {
protected ActionForward performAction(ActionMapping mapping,
ActionForm form, HttpServletRequest request,
HttpServletResponse response) throws Exception {
request.setAttribute(ALLOW_EDITS_KEY, "true");
request.setAttribute(PREVIOUS_DISABLED, "true");
request.setAttribute(NEXT_DISABLED, "true");
// System.out.println("I am in TestVerificationViewAction ");
BaseActionForm testManagementForm = (BaseActionForm) form;
if (request.getParameter(ID) == null) {
testManagementForm.initialize(mapping);
}
String accessionNumber = null;
accessionNumber = (String)request.getParameter(ACCESSION_NUMBER);
if (StringUtil.isNullorNill(accessionNumber)) {
accessionNumber = (String)testManagementForm.get("accessionNumber");
}
testManagementForm.initialize(mapping);
Date today = Calendar.getInstance().getTime();
String dateAsText = DateUtil.formatDateAsText(today);
Sample sample = new Sample();
SampleItem sampleItem = new SampleItem();
List analyses = new ArrayList();
SampleDAO sampleDAO = new SampleDAOImpl();
SampleItemDAO sampleItemDAO = new SampleItemDAOImpl();
AnalysisDAO analysisDAO = new AnalysisDAOImpl();
//bugzilla 2532 removed line
Patient patient = new Patient();
Person person = new Person();
SampleHuman sampleHuman = new SampleHuman();
PatientDAO patientDAO = new PatientDAOImpl();
SampleHumanDAO sampleHumanDAO = new SampleHumanDAOImpl();
ProviderDAO providerDAO = new ProviderDAOImpl();
SampleOrganization sampleOrganization = new SampleOrganization();
PersonDAO personDAO = new PersonDAOImpl();
SampleOrganizationDAO sampleOrganizationDAO = new SampleOrganizationDAOImpl();
Provider provider = new Provider();
Person providerPerson = new Person();
List sampleProjects = new ArrayList();
StatusOfSample statusOfSample = new StatusOfSample();
StatusOfSampleDAO statusOfSampleDAO = new StatusOfSampleDAOImpl();
sample.setAccessionNumber(accessionNumber);
sampleDAO.getSampleByAccessionNumber(sample);
if (!StringUtil.isNullorNill(sample.getId())) {
String clientReference = sample.getClientReference();
String collectionDateForDisplay = sample.getCollectionDateForDisplay();
String collectionTimeForDisplay = sample.getCollectionTimeForDisplay();
String receivedDateForDisplay = sample.getReceivedDateForDisplay();
String stickerReceivedFlag = sample.getStickerReceivedFlag();
String referredCultureFlag = sample.getReferredCultureFlag();
PropertyUtils.setProperty(form, "accessionNumber", accessionNumber);
PropertyUtils.setProperty(form, "clientReference", clientReference);
PropertyUtils.setProperty(form, "collectionDateForDisplay", collectionDateForDisplay);
PropertyUtils.setProperty(form, "collectionTimeForDisplay", collectionTimeForDisplay);
PropertyUtils.setProperty(form, "receivedDateForDisplay", receivedDateForDisplay);
PropertyUtils.setProperty(form, "stickerReceivedFlag", stickerReceivedFlag);
PropertyUtils.setProperty(form, "referredCultureFlag", referredCultureFlag);
//bugzilla 1773 need to store sample not sampleId for use in sorting
sampleItem.setSample(sample);
sampleItemDAO.getDataBySample(sampleItem);
//bugzilla 1942 is at least one linked analysis already reported (printed date NOT null)?
boolean isAnalysisReported = false;
if (sampleItem.getId() != null) {
//bugzilla 2227
analyses = analysisDAO.getMaxRevisionAnalysesBySample(sampleItem);
}
for (int i = 0; i < analyses.size(); i++) {
Analysis analysis = (Analysis) analyses.get(i);
if (analysis.getPrintedDate() != null) {
isAnalysisReported = true;
break;
}
}
//bugzilla 1942: change logic to disable "add tests" button and to disable "edit sample demographics" button
String editOption = "";
//bugzilla 2028: added disable property for QA Events
String qaEventsAllowEdit = "";
if (null != sample.getStatus()) {
if ((sample.getStatus().equals(SystemConfiguration.getInstance().getSampleStatusReleased()) && !isAnalysisReported)
|| (sample.getStatus().equals(SystemConfiguration.getInstance().getSampleStatusEntry2Complete()))) {
editOption = "true";
}
//bugzilla 2501
HttpSession session = request.getSession();
boolean qaEventsForCircularReferenceDisabled = false;
if (TestManagementRoutingSwitchSessionHandler.isSwitchOn(IActionConstants.TEST_MANAGEMENT_ROUTING_FROM_QAEVENTS_ENTRY, session)) {
qaEventsForCircularReferenceDisabled = true;
}
if (!qaEventsForCircularReferenceDisabled) {
qaEventsAllowEdit = "true";
}
/*
* FOR lable printed special status.
*/
//bugzilla 2227 we now allow amending
//testsAddOption is currently always true (but I am leaving this functionality commented out
//if we need to add restrictions later
String testsAddOption = "";
/*if (sample.getStatus().equals(
SystemConfiguration.getInstance()
.getSampleStatusReleased())
&& isAnalysisReported) {
testsAddOption = "false";
} else {
testsAddOption = "true";
}*/
testsAddOption = "true";
PropertyUtils.setProperty(form, "testsAddOption",
testsAddOption);
//bugzilla 2300
String testsCancelOption = "true";
PropertyUtils.setProperty(form, "testsCancelOption",
testsCancelOption);
//bugzilla 2227
String amendMode = "false";
if (sample.getStatus().equals(
SystemConfiguration.getInstance()
.getSampleStatusReleased())
&& isAnalysisReported) {
amendMode = "true";
}
PropertyUtils.setProperty(form, "amendMode",
amendMode);
// bugzilla 1942 display sample status (name) upper right
statusOfSample.setCode(sample.getStatus());
statusOfSample.setStatusType(SystemConfiguration.getInstance()
.getSampleStatusType());
statusOfSample = statusOfSampleDAO
.getDataByStatusTypeAndStatusCode(statusOfSample);
if (null != statusOfSample) {
PropertyUtils.setProperty(form, "sampleStatus",
statusOfSample.getStatusOfSampleName());
} else {
PropertyUtils.setProperty(form, "sampleStatus", BLANK);
}
}
PropertyUtils.setProperty(form, "editOption", editOption);
PropertyUtils.setProperty(form, "qaEventsAllowEdit", qaEventsAllowEdit);
sampleHuman.setSampleId(sample.getId());
sampleHumanDAO.getDataBySample(sampleHuman);
// sampleItem.setSampleId(sample.getId());
// sampleItemDAO.getDataBySample(sampleItem);
patient.setId(sampleHuman.getPatientId());
sampleHuman.setSampleId(sample.getId());
sampleHumanDAO.getDataBySample(sampleHuman);
sampleOrganization.setSample(sample);
sampleOrganizationDAO.getDataBySample(sampleOrganization);
if (sampleHuman.getPatientId() != null) {
patient.setId(sampleHuman.getPatientId());
patientDAO.getData(patient);
person = patient.getPerson();
personDAO.getData(person);
}
if (sampleHuman.getProviderId() != null) {
provider.setId(sampleHuman.getProviderId());
providerDAO.getData(provider);
providerPerson = provider.getPerson();
personDAO.getData(providerPerson);
String provider_personId = providerPerson.getId();
PropertyUtils.setProperty(form, "provider_personId", provider_personId);
String providerFirstName = providerPerson.getFirstName();
String providerLastName = providerPerson.getLastName();
String providerWorkPhoneFull = providerPerson.getWorkPhone();
String providerWorkPhone = StringUtil.formatPhoneForDisplay(providerWorkPhoneFull);
String providerWorkPhoneExtension = StringUtil.formatExtensionForDisplay(providerWorkPhoneFull);
PropertyUtils.setProperty(form, "providerFirstName", providerFirstName);
PropertyUtils.setProperty(form, "providerLastName", providerLastName);
PropertyUtils.setProperty(form, "providerWorkPhone", providerWorkPhone);
PropertyUtils.setProperty(form, "providerWorkPhoneExtension", providerWorkPhoneExtension);
}
if (null != sampleOrganization.getOrganization()) {
//bugzilla 2069
String organizationLocalAbbreviation = sampleOrganization.getOrganization().getOrganizationLocalAbbreviation();
String organizationName = sampleOrganization.getOrganization().getOrganizationName();
String organizationBoth = organizationLocalAbbreviation+ " / "+ organizationName;
//bugzilla 2069
PropertyUtils.setProperty(form, "organizationLocalAbbreviation", organizationLocalAbbreviation);
PropertyUtils.setProperty(form, "organizationBoth", organizationBoth);
}
if (sampleItem.getId() != null) {
TypeOfSample typeOfSample = sampleItem.getTypeOfSample();
SourceOfSample sourceOfSample = sampleItem.getSourceOfSample();
if (typeOfSample != null) {
PropertyUtils.setProperty(form, "typeOfSample",
typeOfSample);
String typeOfSampleDesc = typeOfSample.getDescription();
PropertyUtils.setProperty(form, "typeOfSampleDesc", typeOfSampleDesc);
String typeOfSampleId = typeOfSample.getId();
PropertyUtils.setProperty(form, "typeOfSampleId", typeOfSampleId);
}
if (sourceOfSample != null) {
PropertyUtils.setProperty(form, "sourceOfSample",
sourceOfSample);
String sourceOfSampleDesc = sourceOfSample.getDescription();
PropertyUtils.setProperty(form, "sourceOfSampleDesc", sourceOfSampleDesc);
String sourceOfSampleId = sourceOfSample.getId();
PropertyUtils.setProperty(form, "sourceOfSampleId", sourceOfSampleId);
}
String sourceOther = sampleItem.getSourceOther();
PropertyUtils.setProperty(form, "sourceOther", sourceOther);
}
sampleProjects = sample.getSampleProjects();
if (sampleProjects != null && sampleProjects.size() > 0) {
SampleProject sampleProject = (SampleProject) sampleProjects
.get(0);
//bugzilla 2438
String projectid = sampleProject.getProject().getLocalAbbreviation();
String projectname = sampleProject.getProject().getProjectName();
String projectIdAndName = projectid + " / " + projectname;
PropertyUtils.setProperty(form, "projectIdAndName", projectIdAndName);
PropertyUtils.setProperty(form, "projectIdOrName", projectid);
PropertyUtils.setProperty(form, "projectNameOrId", projectname);
if (sampleProjects.size() > 1) {
SampleProject sampleProject2 = (SampleProject) sampleProjects
.get(1);
//bugzilla 2438
String projectId2 = sampleProject2.getProject().getLocalAbbreviation();
String projectName2 = sampleProject2.getProject().getProjectName();
String project2IdAndName = projectId2 + " / " + projectName2;
PropertyUtils.setProperty(form, "project2IdAndName", project2IdAndName);
PropertyUtils.setProperty(form, "project2IdOrName", projectId2);
PropertyUtils.setProperty(form, "project2NameOrId", projectName2);
}
}
if (null != patient.getId()) {
patientDAO.getData(patient);
person = patient.getPerson();
//bugzilla 2227
analyses = analysisDAO.getMaxRevisionAnalysesBySample(sampleItem);
String firstName = person.getFirstName();
String lastName = person.getLastName();
String middleName = person.getMiddleName();
String multipleUnit = person.getMultipleUnit();
String streetAddress = person.getStreetAddress();
String city = person.getCity();
String state = person.getState();
String zipCode = person.getZipCode();
String birthDateForDisplay = patient.getBirthDateForDisplay();
String gender = patient.getGender();
String externalId = patient.getExternalId();
//bugzilla 1904
String chartNumber = patient.getChartNumber();
PropertyUtils.setProperty(form, "firstName", firstName);
PropertyUtils.setProperty(form, "lastName", lastName);
PropertyUtils.setProperty(form, "middleName", middleName);
PropertyUtils.setProperty(form, "multipleUnit", multipleUnit);
PropertyUtils.setProperty(form, "streetAddress", streetAddress);
//bugzilla 2136: (due to change to tiles-def.xml to use popupTemplate to fix popup losing focus)
// these validations were failing if values not trimmed
if (city != null) city = city.trim();
if (state != null) state = state.trim();
if (zipCode != null) zipCode = zipCode.trim();
PropertyUtils.setProperty(form, "city", city);
PropertyUtils.setProperty(form, "zipCode", zipCode);
PropertyUtils.setProperty(form, "state", state);
PropertyUtils.setProperty(form, "birthDateForDisplay", birthDateForDisplay);
PropertyUtils.setProperty(form, "gender", gender);
PropertyUtils.setProperty(form, "externalId", externalId);
//bugzilla 1904
PropertyUtils.setProperty(form, "chartNumber", chartNumber);
}
}
//bugzilla 2227
String sampleHasTestRevisions = "false";
//bugzilla 2532 sort tests like results report
//indent child tests with dashes
analyses = sortTests(analyses);
int level = 0;
String indent = "";
HashMap parentToChildLevelMap = new HashMap();
if (analyses != null) {
// there is one Analysis per Test
for (int i = 0; i < analyses.size(); i++) {
Analysis analysis = (Analysis) analyses.get(i);
Test t = (Test) analysis.getTest();
level = 0;
if (analysis.getParentAnalysis() != null) {
//lookup in parentToChildLevelMap
String parentAnalysisId = analysis.getParentAnalysis().getId();
if (parentToChildLevelMap.containsKey(parentAnalysisId)) {
//get the child level
level = Integer.valueOf((String)parentToChildLevelMap.get(parentAnalysisId));
}
}
parentToChildLevelMap.put(analysis.getId(), String.valueOf(level + 1));
//bugzilla 2227
if (!analysis.getRevision().equals("0")) {
sampleHasTestRevisions = "true";
}
indent = "";
if (level > 0) {
for (int j = 0; j < level; j++) {
indent = indent + "---";
}
}
analysis.setAssignedSortedTestTreeDisplayValue(indent + t.getTestDisplayValue());
}
}
//bugzilla 1856
//bugzilla 2532 (already sorted analyses above to have child tests below parent tests)
//Collections.sort(tests, TestComparator.DESCRIPTION_COMPARATOR);
PropertyUtils.setProperty(form, "tests", analyses);
//bugzilla 2227
testManagementForm.set("sampleHasTestRevisions", sampleHasTestRevisions);
// **** for optimistic locking
testManagementForm.set("lastupdated", sample.getLastupdated());
testManagementForm.set("personLastupdated", person.getLastupdated());
testManagementForm.set("patientLastupdated", patient.getLastupdated());
testManagementForm.set("providerPersonLastupdated", providerPerson
.getLastupdated());
testManagementForm.set("providerLastupdated", provider.getLastupdated());
testManagementForm.set("sampleItemLastupdated", sampleItem.getLastupdated());
testManagementForm.set("sampleHumanLastupdated", sampleHuman.getLastupdated());
testManagementForm.set("sampleOrganizationLastupdated", sampleOrganization.getLastupdated());
// **** for validating the date fields
PropertyUtils.setProperty(form, "currentDate", dateAsText);
request.setAttribute(ACCESSION_NUMBER, accessionNumber);
return mapping.findForward("success");
}
protected String getPageTitleKey() {
return "testmanagement.title";
}
protected String getPageSubtitleKey() {
return "testmanagement.title";
}
}