/**
* The contents of this file are subject to the Mozilla Public License
* Version 1.1 (the "License"); you may not use this file except in
* compliance with the License. You may obtain a copy of the License at
* http://www.mozilla.org/MPL/
*
* Software distributed under the License is distributed on an "AS IS"
* basis, WITHOUT WARRANTY OF ANY KIND, either express or implied. See the
* License for the specific language governing rights and limitations under
* the License.
*
* The Original Code is OpenELIS code.
*
* Copyright (C) The Minnesota Department of Health. All Rights Reserved.
*/
package us.mn.state.health.lims.qaevent.action;
import org.apache.commons.beanutils.PropertyUtils;
import org.apache.struts.Globals;
import org.apache.struts.action.ActionForm;
import org.apache.struts.action.ActionForward;
import org.apache.struts.action.ActionMapping;
import org.apache.struts.action.ActionMessages;
import us.mn.state.health.lims.action.dao.ActionDAO;
import us.mn.state.health.lims.action.daoimpl.ActionDAOImpl;
import us.mn.state.health.lims.action.valueholder.Action;
import us.mn.state.health.lims.analysis.dao.AnalysisDAO;
import us.mn.state.health.lims.analysis.daoimpl.AnalysisDAOImpl;
import us.mn.state.health.lims.analysis.valueholder.Analysis;
import us.mn.state.health.lims.analysisqaevent.dao.AnalysisQaEventDAO;
import us.mn.state.health.lims.analysisqaevent.daoimpl.AnalysisQaEventDAOImpl;
import us.mn.state.health.lims.analysisqaevent.valueholder.AnalysisQaEvent;
import us.mn.state.health.lims.analysisqaeventaction.dao.AnalysisQaEventActionDAO;
import us.mn.state.health.lims.analysisqaeventaction.daoimpl.AnalysisQaEventActionDAOImpl;
import us.mn.state.health.lims.analysisqaeventaction.valueholder.AnalysisQaEventAction;
import us.mn.state.health.lims.common.action.BaseAction;
import us.mn.state.health.lims.common.action.BaseActionForm;
import us.mn.state.health.lims.common.exception.LIMSRuntimeException;
import us.mn.state.health.lims.common.log.LogEvent;
import us.mn.state.health.lims.common.util.DateUtil;
import us.mn.state.health.lims.common.util.StringUtil;
import us.mn.state.health.lims.common.util.SystemConfiguration;
import us.mn.state.health.lims.common.util.validator.ActionError;
import us.mn.state.health.lims.hibernate.HibernateUtil;
import us.mn.state.health.lims.login.valueholder.UserSessionData;
import us.mn.state.health.lims.qaevent.dao.QaEventDAO;
import us.mn.state.health.lims.qaevent.daoimpl.QaEventDAOImpl;
import us.mn.state.health.lims.qaevent.valueholder.QaEvent;
import us.mn.state.health.lims.sample.dao.SampleDAO;
import us.mn.state.health.lims.sample.daoimpl.SampleDAOImpl;
import us.mn.state.health.lims.sample.valueholder.Sample;
import us.mn.state.health.lims.sampleitem.dao.SampleItemDAO;
import us.mn.state.health.lims.sampleitem.daoimpl.SampleItemDAOImpl;
import us.mn.state.health.lims.sampleitem.valueholder.SampleItem;
import us.mn.state.health.lims.sampleqaevent.dao.SampleQaEventDAO;
import us.mn.state.health.lims.sampleqaevent.daoimpl.SampleQaEventDAOImpl;
import us.mn.state.health.lims.sampleqaevent.valueholder.SampleQaEvent;
import us.mn.state.health.lims.sampleqaeventaction.dao.SampleQaEventActionDAO;
import us.mn.state.health.lims.sampleqaeventaction.daoimpl.SampleQaEventActionDAOImpl;
import us.mn.state.health.lims.sampleqaeventaction.valueholder.SampleQaEventAction;
import us.mn.state.health.lims.systemuser.dao.SystemUserDAO;
import us.mn.state.health.lims.systemuser.daoimpl.SystemUserDAOImpl;
import us.mn.state.health.lims.systemuser.valueholder.SystemUser;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import java.util.*;
/**
* @author diane benz
*/
public class QaEventsEntryUpdateAction extends BaseAction {
private boolean isNew = false;
protected ActionForward performAction(ActionMapping mapping,
ActionForm form, HttpServletRequest request,
HttpServletResponse response) throws Exception {
String forward = FWD_SUCCESS;
request.setAttribute(ALLOW_EDITS_KEY, "true");
request.setAttribute(PREVIOUS_DISABLED, "true");
request.setAttribute(NEXT_DISABLED, "true");
BaseActionForm dynaForm = (BaseActionForm) form;
String accessionNumber = (String) dynaForm.get("accessionNumber");
String[] selectedAnalysisQaEventIdsForCompletion = (String[]) dynaForm
.get("selectedAnalysisQaEventIdsForCompletion");
List testQaEvents = (List) dynaForm.get("testQaEvents");
//bugzilla 2500
String[] selectedSampleQaEventIdsForCompletion = (String[]) dynaForm
.get("selectedSampleQaEventIdsForCompletion");
List sampleQaEvents = (List) dynaForm.get("sampleQaEvents");
//bugzilla 2566 for now qa events is for both humand and newborn
//bugzilla 2501
String multipleSampleMode = (String) dynaForm.get("multipleSampleMode");
String qaEventCategoryId = (String)dynaForm.get("selectedQaEventsCategoryId");
//bugzilla 2500
String addQaEventPopupSelectedQaEventIdsForSample = (String) dynaForm.get("addQaEventPopupSelectedQaEventIdsForSample");
StringTokenizer qaEventIdTokenizerForSample = new StringTokenizer(
addQaEventPopupSelectedQaEventIdsForSample, SystemConfiguration
.getInstance().getDefaultIdSeparator());
List listOfAddedQaEventIdsForSample = new ArrayList();
while (qaEventIdTokenizerForSample.hasMoreElements()) {
String qaEventIdForSample = (String) qaEventIdTokenizerForSample
.nextElement();
listOfAddedQaEventIdsForSample.add(qaEventIdForSample);
}
String addActionSelectedActionIdsForSample = (String) dynaForm.get("addActionPopupSelectedActionIdsForSample");
String addActionSelectedSampleQaEventIds = (String) dynaForm.get("addActionPopupSelectedSampleQaEventIds");
StringTokenizer actionIdTokenizerForSample = new StringTokenizer(
addActionSelectedActionIdsForSample, SystemConfiguration
.getInstance().getDefaultIdSeparator());
List listOfAddedActionIdsForSample = new ArrayList();
while (actionIdTokenizerForSample.hasMoreElements()) {
String actionIdForSample = (String) actionIdTokenizerForSample
.nextElement();
listOfAddedActionIdsForSample.add(actionIdForSample);
}
StringTokenizer sampleQaEventIdTokenizer = new StringTokenizer(
addActionSelectedSampleQaEventIds, SystemConfiguration
.getInstance().getDefaultIdSeparator());
List listOfSampleQaEventIds = new ArrayList();
while (sampleQaEventIdTokenizer.hasMoreElements()) {
String sampleQaEventId = (String) sampleQaEventIdTokenizer
.nextElement();
listOfSampleQaEventIds.add(sampleQaEventId);
}
//end bugzilla 2500
String addQaEventSelectedTestIds = (String) dynaForm.get("addQaEventPopupSelectedTestIds");
String addQaEventSelectedQaEventIds = (String) dynaForm.get("addQaEventPopupSelectedQaEventIds");
StringTokenizer testIdTokenizer = new StringTokenizer(
addQaEventSelectedTestIds, SystemConfiguration
.getInstance().getDefaultIdSeparator());
List listOfTestIds = new ArrayList();
while (testIdTokenizer.hasMoreElements()) {
String testId = (String) testIdTokenizer
.nextElement();
listOfTestIds.add(testId);
}
StringTokenizer qaEventIdTokenizer = new StringTokenizer(
addQaEventSelectedQaEventIds, SystemConfiguration
.getInstance().getDefaultIdSeparator());
List listOfAddedQaEventIds = new ArrayList();
while (qaEventIdTokenizer.hasMoreElements()) {
String qaEventId = (String) qaEventIdTokenizer
.nextElement();
listOfAddedQaEventIds.add(qaEventId);
}
String addActionSelectedActionIds = (String) dynaForm.get("addActionPopupSelectedActionIds");
String addActionSelectedAnalysisQaEventIds = (String) dynaForm.get("addActionPopupSelectedAnalysisQaEventIds");
StringTokenizer actionIdTokenizer = new StringTokenizer(
addActionSelectedActionIds, SystemConfiguration
.getInstance().getDefaultIdSeparator());
List listOfActionIds = new ArrayList();
while (actionIdTokenizer.hasMoreElements()) {
String actionId = (String) actionIdTokenizer
.nextElement();
listOfActionIds.add(actionId);
}
StringTokenizer analysisQaEventIdTokenizer = new StringTokenizer(
addActionSelectedAnalysisQaEventIds, SystemConfiguration
.getInstance().getDefaultIdSeparator());
List listOfAnalysisQaEventIds = new ArrayList();
while (analysisQaEventIdTokenizer.hasMoreElements()) {
String analysisQaEventId = (String) analysisQaEventIdTokenizer
.nextElement();
listOfAnalysisQaEventIds.add(analysisQaEventId);
}
// server side validation of accessionNumber
// validate on server-side sample accession number
ActionMessages errors = null;
try {
errors = new ActionMessages();
errors = validateAccessionNumber(request, errors, dynaForm);
} catch (Exception e) {
//bugzilla 2154
LogEvent.logError("QaEventsEntryUpdateAction","performAction()",e.toString());
ActionError error = new ActionError("errors.ValidationException",
null, null);
errors.add(ActionMessages.GLOBAL_MESSAGE, error);
}
if (errors != null && errors.size() > 0) {
saveErrors(request, errors);
return mapping.findForward(FWD_FAIL);
}
// initialize the form
dynaForm.initialize(mapping);
// 1926 get sysUserId from login module
UserSessionData usd = (UserSessionData)request.getSession().getAttribute(USER_SESSION_DATA);
String sysUserId = String.valueOf(usd.getSystemUserId());
//bugzilla 2481 Action Owner
SystemUser systemUser = new SystemUser();
systemUser.setId(sysUserId);
SystemUserDAO systemUserDAO = new SystemUserDAOImpl();
systemUserDAO.getData(systemUser);
Date today = Calendar.getInstance().getTime();
String dateAsText = DateUtil.formatDateAsText(today);
org.hibernate.Transaction tx = HibernateUtil.getSession()
.beginTransaction();
AnalysisQaEventDAO analysisQaEventDAO = new AnalysisQaEventDAOImpl();
SampleDAO sampleDAO = new SampleDAOImpl();
SampleItemDAO sampleItemDAO = new SampleItemDAOImpl();
AnalysisDAO analysisDAO = new AnalysisDAOImpl();
QaEventDAO qaEventDAO = new QaEventDAOImpl();
ActionDAO actionDAO = new ActionDAOImpl();
AnalysisQaEventActionDAO analysisQaEventActionDAO = new AnalysisQaEventActionDAOImpl();
//bugzilla 2501
SampleQaEventDAO sampleQaEventDAO = new SampleQaEventDAOImpl();
SampleQaEventActionDAO sampleQaEventActionDAO = new SampleQaEventActionDAOImpl();
if (!StringUtil.isNullorNill(accessionNumber)) {
try {
//bugzilla 2500 first update completed dates for sample
if (selectedSampleQaEventIdsForCompletion != null
&& selectedSampleQaEventIdsForCompletion.length > 0) {
for (int i = 0; i < selectedSampleQaEventIdsForCompletion.length; i++) {
String sampleQaEventId = selectedSampleQaEventIdsForCompletion[i];
SampleQaEvent sampleQaEvent = new SampleQaEvent();
sampleQaEvent.setId(sampleQaEventId);
sampleQaEventDAO.getData(sampleQaEvent);
if (sampleQaEvent.getCompletedDate() == null) {
sampleQaEvent.setCompletedDateForDisplay(dateAsText);
sampleQaEvent.setSysUserId(sysUserId);
sampleQaEventDAO.updateData(sampleQaEvent);
}
}
}
//first update completed dates
if (selectedAnalysisQaEventIdsForCompletion != null
&& selectedAnalysisQaEventIdsForCompletion.length > 0) {
for (int i = 0; i < selectedAnalysisQaEventIdsForCompletion.length; i++) {
String analysisQaEventId = selectedAnalysisQaEventIdsForCompletion[i];
AnalysisQaEvent analysisQaEvent = new AnalysisQaEvent();
analysisQaEvent.setId(analysisQaEventId);
analysisQaEventDAO.getData(analysisQaEvent);
if (analysisQaEvent.getCompletedDate() == null) {
analysisQaEvent.setCompletedDateForDisplay(dateAsText);
analysisQaEvent.setSysUserId(sysUserId);
analysisQaEventDAO.updateData(analysisQaEvent);
}
}
}
//bug 2500 now check if we added new Qa Events for sample
if (listOfAddedQaEventIdsForSample != null && listOfAddedQaEventIdsForSample.size() > 0) {
Sample sample = new Sample();
sample.setAccessionNumber(accessionNumber);
sampleDAO.getSampleByAccessionNumber(sample);
if (!StringUtil.isNullorNill(sample.getId())) {
//insert all qaEvents selected for this sample if doesn't exist already
for (int j = 0; j < listOfAddedQaEventIdsForSample.size(); j++) {
//if this doesn't exist in in SAMPLE_QAEVENT already then insert it
QaEvent qaEvent = new QaEvent();
qaEvent.setId((String)listOfAddedQaEventIdsForSample.get(j));
qaEventDAO.getData(qaEvent);
if (qaEvent != null) {
SampleQaEvent sampleQaEvent = new SampleQaEvent();
sampleQaEvent.setSample(sample);
sampleQaEvent.setQaEvent(qaEvent);
sampleQaEvent = sampleQaEventDAO.getSampleQaEventBySampleAndQaEvent(sampleQaEvent);
if (sampleQaEvent != null) {
//do nothing
} else {
//insert this new analysis qa event
sampleQaEvent = new SampleQaEvent();
sampleQaEvent.setSample(sample);
sampleQaEvent.setQaEvent(qaEvent);
sampleQaEvent.setSysUserId(sysUserId);
sampleQaEventDAO.insertData(sampleQaEvent);
}
}
}
}
}
//now check if we added new Actions
if (listOfSampleQaEventIds != null && listOfSampleQaEventIds.size() > 0 && listOfAddedActionIdsForSample != null && listOfAddedActionIdsForSample.size() > 0) {
Sample sample = new Sample();
sample.setAccessionNumber(accessionNumber);
sampleDAO.getSampleByAccessionNumber(sample);
if (!StringUtil.isNullorNill(sample.getId())) {
SampleQaEvent sampleQaEvent = new SampleQaEvent();
sampleQaEvent.setSample(sample);
sampleQaEvents = sampleQaEventDAO.getSampleQaEventsBySample(sampleQaEvent);
for (int j = 0; j < sampleQaEvents.size(); j++) {
SampleQaEvent sampQaEvent = (SampleQaEvent)sampleQaEvents.get(j);
if (listOfSampleQaEventIds.contains(sampQaEvent.getId())) {
for (int k = 0; k < listOfAddedActionIdsForSample.size(); k++) {
Action action = new Action();
action.setId((String)listOfAddedActionIdsForSample.get(k));
actionDAO.getData(action);
//if this analysis qa event action doesn't already exist in ANALYSIS_QA_EVENT_ACTION then insert it
if (action != null) {
SampleQaEventAction sampQaEventAction = new SampleQaEventAction();
sampQaEventAction.setAction(action);
sampQaEventAction.setSampleQaEvent(sampQaEvent);
sampQaEventAction = sampleQaEventActionDAO.getSampleQaEventActionBySampleQaEventAndAction(sampQaEventAction);
if (sampQaEventAction != null) {
//do nothing if already exists
} else {
//insert this new analysis qa event action
sampQaEventAction = new SampleQaEventAction();
sampQaEventAction.setSampleQaEvent(sampQaEvent);
sampQaEventAction.setAction(action);
sampQaEventAction.setCreatedDateForDisplay(dateAsText);
sampQaEventAction.setSysUserId(sysUserId);
//bugzilla 2481
sampQaEventAction.setSystemUser(systemUser);
sampleQaEventActionDAO.insertData(sampQaEventAction);
}
}
}
}
}
}
}
//end 2500
//now check if we added new Qa Events
if (listOfAddedQaEventIds != null && listOfAddedQaEventIds.size() > 0 && listOfTestIds != null && listOfTestIds.size() > 0) {
Sample sample = new Sample();
sample.setAccessionNumber(accessionNumber);
sampleDAO.getSampleByAccessionNumber(sample);
List analyses = new ArrayList();
if (!StringUtil.isNullorNill(sample.getId())) {
SampleItem sampleItem = new SampleItem();
sampleItem.setSample(sample);
sampleItemDAO.getDataBySample(sampleItem);
if (sampleItem.getId() != null ){
//bugzilla 2227
analyses = analysisDAO.getMaxRevisionAnalysesBySample(sampleItem);
}
}
if (analyses != null) {
for (int i = 0; i < analyses.size(); i++) {
Analysis analysis = (Analysis)analyses.get(i);
if (listOfTestIds.contains(analysis.getTest().getId())) {
//insert all qaEvents selected for this test if doesn't exist already
for (int j = 0; j < listOfAddedQaEventIds.size(); j++) {
//if this doesn't exist in in ANALYSIS_QAEVENT already then insert it
QaEvent qaEvent = new QaEvent();
qaEvent.setId((String)listOfAddedQaEventIds.get(j));
qaEventDAO.getData(qaEvent);
if (qaEvent != null) {
AnalysisQaEvent analysisQaEvent = new AnalysisQaEvent();
analysisQaEvent.setAnalysis(analysis);
analysisQaEvent.setQaEvent(qaEvent);
analysisQaEvent = analysisQaEventDAO.getAnalysisQaEventByAnalysisAndQaEvent(analysisQaEvent);
if (analysisQaEvent != null) {
//do nothing
} else {
//insert this new analysis qa event
analysisQaEvent = new AnalysisQaEvent();
analysisQaEvent.setAnalysis(analysis);
analysisQaEvent.setQaEvent(qaEvent);
analysisQaEvent.setSysUserId(sysUserId);
analysisQaEventDAO.insertData(analysisQaEvent);
}
}
}
}
}
}
}
//now check if we added new Actions
if (listOfAnalysisQaEventIds != null && listOfAnalysisQaEventIds.size() > 0 && listOfActionIds != null && listOfActionIds.size() > 0) {
Sample sample = new Sample();
sample.setAccessionNumber(accessionNumber);
sampleDAO.getSampleByAccessionNumber(sample);
List analyses = new ArrayList();
if (!StringUtil.isNullorNill(sample.getId())) {
SampleItem sampleItem = new SampleItem();
sampleItem.setSample(sample);
sampleItemDAO.getDataBySample(sampleItem);
if (sampleItem.getId() != null ){
//bugzilla 2227
analyses = analysisDAO.getMaxRevisionAnalysesBySample(sampleItem);
}
}
if (analyses != null) {
for (int i = 0; i < analyses.size(); i++) {
Analysis analysis = (Analysis)analyses.get(i);
AnalysisQaEvent analysisQaEvent = new AnalysisQaEvent();
analysisQaEvent.setAnalysis(analysis);
List analysisQaEvents = analysisQaEventDAO.getAnalysisQaEventsByAnalysis(analysisQaEvent);
for (int j = 0; j < analysisQaEvents.size(); j++) {
AnalysisQaEvent analQaEvent = (AnalysisQaEvent)analysisQaEvents.get(j);
if (listOfAnalysisQaEventIds.contains(analQaEvent.getId())) {
for (int k = 0; k < listOfActionIds.size(); k++) {
Action action = new Action();
action.setId((String)listOfActionIds.get(k));
actionDAO.getData(action);
//if this analysis qa event action doesn't already exist in ANALYSIS_QA_EVENT_ACTION then insert it
if (action != null) {
AnalysisQaEventAction analQaEventAction = new AnalysisQaEventAction();
analQaEventAction.setAction(action);
analQaEventAction.setAnalysisQaEvent(analQaEvent);
analQaEventAction = analysisQaEventActionDAO.getAnalysisQaEventActionByAnalysisQaEventAndAction(analQaEventAction);
if (analQaEventAction != null) {
//do nothing if already exists
} else {
//insert this new analysis qa event action
analQaEventAction = new AnalysisQaEventAction();
analQaEventAction.setAnalysisQaEvent(analQaEvent);
analQaEventAction.setAction(action);
analQaEventAction.setCreatedDateForDisplay(dateAsText);
analQaEventAction.setSysUserId(sysUserId);
//bugzilla 2481
analQaEventAction.setSystemUser(systemUser);
analysisQaEventActionDAO.insertData(analQaEventAction);
}
}
}
}
}
}
}
}
tx.commit();
} catch (LIMSRuntimeException lre) {
//bugzilla 2154
LogEvent.logError("QaEventsEntryUpdateAction","performAction()",lre.toString());
tx.rollback();
errors = new ActionMessages();
ActionError error = null;
if (lre.getException() instanceof org.hibernate.StaleObjectStateException) {
error = new ActionError(
"errors.OptimisticLockException", null, null);
} else {
error = new ActionError("errors.UpdateException", null,
null);
}
errors.add(ActionMessages.GLOBAL_MESSAGE, error);
saveErrors(request, errors);
request.setAttribute(Globals.ERROR_KEY, errors);
forward = FWD_FAIL;
} finally {
HibernateUtil.closeSession();
}
}
PropertyUtils.setProperty(dynaForm, "accessionNumber", accessionNumber);
PropertyUtils.setProperty(dynaForm,
"selectedAnalysisQaEventIdsForCompletion",
selectedAnalysisQaEventIdsForCompletion);
//bugzilla 2500
PropertyUtils.setProperty(dynaForm,
"selectedSampleQaEventIdsForCompletion",
selectedSampleQaEventIdsForCompletion);
//bugzilla 2566 for now qa events is for human and newborn
//PropertyUtils.setProperty(dynaForm, "domain", domain);
PropertyUtils.setProperty(dynaForm, "testQaEvents", testQaEvents);
//bugzilla 2501
PropertyUtils.setProperty(dynaForm, "multipleSampleMode", multipleSampleMode);
PropertyUtils.setProperty(dynaForm, "selectedQaEventsCategoryId", qaEventCategoryId);
return mapping.findForward(forward);
}
protected String getPageTitleKey() {
if (isNew) {
return "qaeventsentry.add.title";
} else {
return "qaeventsentry.edit.title";
}
}
protected String getPageTitleKeyParameter(HttpServletRequest request,
ActionForm form) {
BaseActionForm dynaForm = (BaseActionForm) form;
String accn = "";
if (dynaForm.get("accessionNumber") != null) {
accn = (String) dynaForm.get("accessionNumber");
}
return accn;
}
protected String getPageSubtitleKey() {
if (isNew) {
return "qaeventsentry.add.subtitle";
} else {
return "qaeventsentry.edit.subtitle";
}
}
}