/*
*------------------------------------------------------------------------------
* Copyright (C) 2006-2016 University of Dundee & Open Microscopy Environment.
* All rights reserved.
*
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along
* with this program; if not, write to the Free Software Foundation, Inc.,
* 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
*
*------------------------------------------------------------------------------
*/
package training;
import omero.cmd.Response;
import omero.gateway.Gateway;
import omero.gateway.LoginCredentials;
import omero.gateway.SecurityContext;
import omero.gateway.facility.DataManagerFacility;
import omero.log.SimpleLogger;
import omero.model.ChecksumAlgorithm;
import omero.model.ChecksumAlgorithmI;
import omero.model.Dataset;
import omero.model.DatasetI;
import omero.model.FileAnnotation;
import omero.model.FileAnnotationI;
import omero.model.Image;
import omero.model.ImageI;
import omero.model.OriginalFile;
import omero.model.OriginalFileI;
import omero.model.enums.ChecksumAlgorithmSHA1160;
import omero.gateway.model.ExperimenterData;
/**
* Sample code showing how to delete data.
*
* @author Jean-Marie Burel
* <a href="mailto:j.burel@dundee.ac.uk">j.burel@dundee.ac.uk</a>
* @since Beta4.3.2
*/
public class DeleteData
{
//The value used if the configuration file is not used.*/
/** The server address.*/
private static String hostName = "serverName";
/** The username.*/
private static String userName = "userName";
/** The password.*/
private static String password = "password";
//end edit
private Gateway gateway;
private SecurityContext ctx;
/**
* start-code
*/
/**
* Creates an original file.
* @return See above.
* @throws Exception
*/
private OriginalFile createOriginalFile() throws Exception {
OriginalFileI oFile = new OriginalFileI();
oFile.setName(omero.rtypes.rstring("of1"));
oFile.setPath(omero.rtypes.rstring("/omero"));
oFile.setSize(omero.rtypes.rlong(0));
final ChecksumAlgorithm checksumAlgorithm = new ChecksumAlgorithmI();
checksumAlgorithm.setValue(
omero.rtypes.rstring(ChecksumAlgorithmSHA1160.value));
oFile.setHasher(checksumAlgorithm);
oFile.setMimetype(omero.rtypes.rstring("application/octet-stream"));
return oFile;
}
// Delete Image
// ============
/**
* Delete Image.
* In the following example, we create an image and delete it.
*/
private void deleteImage()
throws Exception
{
DataManagerFacility dm = gateway.getFacility(DataManagerFacility.class);
//First create an image.
Image img = new ImageI();
img.setName(omero.rtypes.rstring("image1"));
img.setDescription(omero.rtypes.rstring("descriptionImage1"));
img = (Image) dm.saveAndReturnObject(ctx, img);
Response rsp = dm.deleteObject(ctx, img);
System.err.println(rsp);
}
// Delete Annotation
// =================
/**
* Delete File annotation.
* In the following example, we create a file annotation, link it to a
* dataset and delete the annotation.
*/
private void deleteFileAnnotation()
throws Exception
{
DataManagerFacility dm = gateway.getFacility(DataManagerFacility.class);
Dataset d = new DatasetI();
d.setName(omero.rtypes.rstring("FileAnnotationDelete"));
FileAnnotation fa = new FileAnnotationI();
fa.setFile(createOriginalFile());
d.linkAnnotation(fa);
d = (Dataset) dm.saveAndReturnObject(ctx, d);
fa = (FileAnnotation) d.linkedAnnotationList().get(0);
Response rsp = dm.deleteObject(ctx, fa);
System.err.println(rsp);
}
/**
* end-code
*/
/**
* Connects and invokes the various methods.
*
* @param args The login credentials.
*/
DeleteData(String[] args)
{
LoginCredentials cred = new LoginCredentials(args);
gateway = new Gateway(new SimpleLogger());
try {
ExperimenterData user = gateway.connect(cred);
ctx = new SecurityContext(user.getGroupId());
deleteImage();
deleteFileAnnotation();
} catch (Exception e) {
e.printStackTrace();
} finally {
try {
gateway.disconnect(); // Be sure to disconnect
} catch (Exception e) {
e.printStackTrace();
}
}
}
/**
* Runs the script without configuration options.
*
* @param args The login credentials.
*/
public static void main(String[] args)
{
if (args == null || args.length == 0)
args = new String[] { "--omero.host=" + hostName,
"--omero.user=" + userName, "--omero.pass=" + password };
new DeleteData(args);
System.exit(0);
}
}