/*
* ome.formats.model.PlaneInfoProcessor
*
*------------------------------------------------------------------------------
* Copyright (C) 2006-2008 University of Dundee. All rights reserved.
*
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along
* with this program; if not, write to the Free Software Foundation, Inc.,
* 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
*
*------------------------------------------------------------------------------
*/
package ome.formats.model;
import java.util.List;
import ome.formats.Index;
import ome.util.LSID;
import omero.metadatastore.IObjectContainer;
import omero.model.PlaneInfo;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* Processes the plane info sets of an IObjectContainerStore and removes
* entities of this rapidly exploding object that have no metadata populated.
*
* @author Chris Allan <callan at blackcat dot ca>
*
*/
public class PlaneInfoProcessor implements ModelProcessor {
/** Logger for this class */
private Logger log = LoggerFactory.getLogger(PlaneInfoProcessor.class);
/**
* Processes the OMERO client side metadata store.
* @param store OMERO metadata store to process.
* @throws ModelException If there is an error during processing.
*/
public void process(IObjectContainerStore store) throws ModelException {
List<IObjectContainer> containers =
store.getIObjectContainers(PlaneInfo.class);
for (IObjectContainer container : containers) {
PlaneInfo pi = (PlaneInfo) container.sourceObject;
if (pi.getDeltaT() == null &&
pi.getExposureTime() == null &&
pi.getPositionX() == null &&
pi.getPositionY() == null &&
pi.getPositionZ() == null) {
LSID lsid = new LSID(
PlaneInfo.class,
container.indexes.get(Index.IMAGE_INDEX.getValue()),
container.indexes.get(Index.PLANE_INDEX.getValue()));
log.debug("Removing empty PlaneInfo: " + lsid);
store.removeIObjectContainer(lsid);
}
}
}
}