/* * #%L * OME Bio-Formats manual and automated test suite. * %% * Copyright (C) 2006 - 2013 Open Microscopy Environment: * - Board of Regents of the University of Wisconsin-Madison * - Glencoe Software, Inc. * - University of Dundee * %% * This program is free software: you can redistribute it and/or modify * it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 2 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/gpl-2.0.html>. * #L% */ package loci.ome; import java.io.BufferedReader; import java.io.IOException; import java.io.InputStreamReader; import loci.common.Constants; import loci.ome.io.OmeroReader; /** * A class for testing the OMERO implementation of * {@link loci.formats.IFormatReader}, for obtaining * pixels and metadata from an OMERO database. * * @author Curtis Rueden ctrueden at wisc.edu */ public class OmeroReaderTest { private static String readLine(BufferedReader in, String prompt, String defaultValue) throws IOException { System.out.print(prompt + " [" + defaultValue + "]: "); String value = in.readLine(); return value.equals("") ? defaultValue : value; } public static void main(String[] args) throws Exception { // get credentials from stdin BufferedReader in = new BufferedReader( new InputStreamReader(System.in, Constants.ENCODING)); String server = readLine(in, "Server", "localhost"); String portValue = readLine(in, "Port", "1099"); String user = readLine(in, "Username", "root"); String pass = readLine(in, "Password", "ome"); String pidValue = readLine(in, "Pixels ID", "1"); int port = Integer.parseInt(portValue); int pid = Integer.parseInt(pidValue); System.out.println(); // connect to OMERO server System.out.println("Initializing OMERO reader"); OmeroReader omero = new OmeroReader(); String id = "omero:\n" + "server=" + server + "\n" + "port=" + port + "\n" + "user=" + user + "\n" + "pass=" + pass + "\n" + "pid=" + pid; omero.setId(id); // print some metadata as a simple test int sizeX = omero.getSizeX(); int sizeY = omero.getSizeY(); System.out.println("Image dimensions are " + sizeX + " x " + sizeY); omero.close(); } }