/* *------------------------------------------------------------------------------ * Copyright (C) 2015 University of Dundee. All rights reserved. * * * This program is free software; you can redistribute it and/or modify * it under the terms of the GNU General Public License as published by * the Free Software Foundation; either version 2 of the License, or * (at your option) any later version. * This program is distributed in the hope that it will be useful, * but WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the * GNU General Public License for more details. * * You should have received a copy of the GNU General Public License along * with this program; if not, write to the Free Software Foundation, Inc., * 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. * *------------------------------------------------------------------------------ */ package integration.gateway; import java.util.ArrayList; import java.util.List; import java.util.Random; import java.util.UUID; import omero.api.IPixelsPrx; import omero.api.RawPixelsStorePrx; import omero.gateway.exception.DSAccessException; import omero.gateway.exception.DSOutOfServiceException; import omero.gateway.exception.DataSourceException; import omero.gateway.rnd.Plane2D; import omero.model.IObject; import omero.model.PixelsType; import org.testng.Assert; import org.testng.annotations.BeforeClass; import org.testng.annotations.Test; import omero.gateway.model.DatasetData; import omero.gateway.model.ImageData; import omero.gateway.model.ProjectData; /** * * @author Dominik Lindner      <a * href="mailto:d.lindner@dundee.ac.uk">d.lindner@dundee.ac.uk</a> * @since 5.1 */ public class RawDataFacilityTest extends GatewayTest { private long imgId; private byte[] rawData; @Override @BeforeClass(alwaysRun = true) protected void setUp() throws Exception { super.setUp(); initData(); } @Test public void testGetPlane() throws DataSourceException, DSOutOfServiceException, DSAccessException { ImageData img = browseFacility.getImage(rootCtx, imgId); Plane2D plane = rawdataFacility.getPlane(rootCtx, img.getDefaultPixels(), 0, 0, 0); byte[] planeData = new byte[100*100]; for(int i=0; i<10000; i++) planeData[i] = plane.getRawValue(i); Assert.assertEquals(planeData, rawData); } @Test public void testGetTile() throws DataSourceException, DSOutOfServiceException, DSAccessException { ImageData img = browseFacility.getImage(rootCtx, imgId); int x = 0, y=0, w=img.getDefaultPixels().getSizeX(), h=1; // get the first pixel row of the image as "tile" Plane2D plane = rawdataFacility.getTile(rootCtx, img.getDefaultPixels(), 0, 0, 0, x, y, w, h); byte[] planeData = new byte[w]; for(int i=0; i<w; i++) planeData[i] = plane.getRawValue(i); byte[] rawDataPart = new byte[w]; System.arraycopy(rawData, 0, rawDataPart, 0, w); Assert.assertEquals(planeData, rawDataPart); } private void initData() throws Exception { ProjectData p = createProject(rootCtx); DatasetData d = createDataset(rootCtx, p); String name = UUID.randomUUID().toString(); IPixelsPrx svc = gw.getPixelsService(rootCtx); List<IObject> types = svc .getAllEnumerations(PixelsType.class.getName()); List<Integer> channels = new ArrayList<Integer>(); for (int i = 0; i < 3; i++) { channels.add(i); } imgId = svc.createImage(100, 100, 1, 1, channels, (PixelsType) types.get(1), name, "").getValue(); List<Long> ids = new ArrayList<Long>(1); ids.add(imgId); ImageData img = browseFacility.getImages(rootCtx, ids).iterator() .next(); List<ImageData> l = new ArrayList<ImageData>(1); l.add(img); datamanagerFacility.addImagesToDataset(rootCtx, l, d); ids.clear(); ids.add(d.getId()); d = browseFacility.getDatasets(rootCtx, ids).iterator().next(); RawPixelsStorePrx store = gw.createPixelsStore(rootCtx); store.setPixelsId(img.getDefaultPixels().getId(), false); Random rand = new Random(); rawData = new byte[100 * 100]; rand.nextBytes(rawData); store.setPlane(rawData, 0, 0, 0); gw.closeService(rootCtx, store); } }