/*
*------------------------------------------------------------------------------
* Copyright (C) 2015 University of Dundee. All rights reserved.
*
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along
* with this program; if not, write to the Free Software Foundation, Inc.,
* 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
*
*------------------------------------------------------------------------------
*/
package integration.gateway;
import java.util.ArrayList;
import java.util.Collection;
import java.util.Iterator;
import java.util.List;
import java.util.UUID;
import junit.framework.Assert;
import omero.api.IPixelsPrx;
import omero.gateway.exception.DSAccessException;
import omero.gateway.exception.DSOutOfServiceException;
import omero.gateway.facility.BrowseFacility;
import omero.gateway.facility.ROIFacility;
import omero.gateway.model.ROIResult;
import omero.model.IObject;
import omero.model.PixelsType;
import org.testng.annotations.BeforeClass;
import org.testng.annotations.Test;
import omero.gateway.model.ImageData;
import omero.gateway.model.ROIData;
import omero.gateway.model.RectangleData;
/**
*
* @author Dominik Lindner <a
* href="mailto:d.lindner@dundee.ac.uk">d.lindner@dundee.ac.uk</a>
* @since 5.1
*/
public class ROIFacilityTest extends GatewayTest {
private ImageData img;
private ROIFacility roifac;
private Collection<ROIData> rois;
@Override
@BeforeClass(alwaysRun = true)
protected void setUp() throws Exception {
super.setUp();
initData();
roifac = gw.getFacility(ROIFacility.class);
}
@Test
public void testSaveROIs() throws DSOutOfServiceException,
DSAccessException {
rois = new ArrayList<ROIData>();
rois.add(createRectangleROI(0, 0, 10, 10));
rois.add(createRectangleROI(11, 11, 10, 10));
rois = roifac.saveROIs(rootCtx, img.getId(), rois);
Assert.assertEquals(rois.size(), 2);
for (ROIData roi : rois) {
Assert.assertTrue("ROI doesn't have an ID!", roi.getId() >= 0);
}
}
private ROIData createRectangleROI(int x, int y, int w, int h) {
ROIData roiData = new ROIData();
RectangleData rectangle = new RectangleData(x, y, w, h);
rectangle.setVisible(true);
roiData.addShapeData(rectangle);
return roiData;
}
@Test(dependsOnMethods = { "testSaveROIs" })
public void testGetROICount() throws DSOutOfServiceException,
DSAccessException {
int n = roifac.getROICount(rootCtx, img.getId());
Assert.assertEquals(2, n);
}
@Test(dependsOnMethods = { "testSaveROIs" })
public void testLoadROIs() throws DSOutOfServiceException,
DSAccessException {
List<ROIResult> roiResults = roifac.loadROIs(rootCtx, img.getId());
List<ROIData> myRois = new ArrayList<ROIData>();
for (ROIResult r : roiResults) {
Collection c = r.getROIs();
for (Object o : c)
myRois.add((ROIData) o);
}
Assert.assertEquals(rois.size(), myRois.size());
Iterator<ROIData> it = myRois.iterator();
while (it.hasNext()) {
ROIData r = it.next();
for (ROIData r2 : rois) {
if (r2.getId() == r.getId())
it.remove();
}
}
Assert.assertTrue("Loaded ROIs don't match saved ROIs!",
myRois.isEmpty());
}
private void initData() throws Exception {
String name = UUID.randomUUID().toString();
IPixelsPrx svc = gw.getPixelsService(rootCtx);
List<IObject> types = svc
.getAllEnumerations(PixelsType.class.getName());
List<Integer> channels = new ArrayList<Integer>();
for (int i = 0; i < 3; i++) {
channels.add(i);
}
long imgId = svc.createImage(100, 100, 1, 1, channels,
(PixelsType) types.get(1), name, "").getValue();
img = gw.getFacility(BrowseFacility.class).getImage(rootCtx, imgId);
}
}