/*
* org.openmicroscopy.shoola.env.data.views.calls.DataFilter
*
*------------------------------------------------------------------------------
* Copyright (C) 2006-2008 University of Dundee. All rights reserved.
*
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License along
* with this program; if not, write to the Free Software Foundation, Inc.,
* 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
*
*------------------------------------------------------------------------------
*/
package org.openmicroscopy.shoola.env.data.views.calls;
//Java imports
import java.util.List;
//Third-party libraries
//Application-internal dependencies
import org.openmicroscopy.shoola.env.data.OmeroMetadataService;
import org.openmicroscopy.shoola.env.data.util.FilterContext;
import omero.gateway.SecurityContext;
import org.openmicroscopy.shoola.env.data.views.BatchCall;
import org.openmicroscopy.shoola.env.data.views.BatchCallTree;
/**
* Filters the nodes by annotation.
*
* @author Jean-Marie Burel
* <a href="mailto:j.burel@dundee.ac.uk">j.burel@dundee.ac.uk</a>
* @author Donald MacDonald
* <a href="mailto:donald@lifesci.dundee.ac.uk">donald@lifesci.dundee.ac.uk</a>
* @version 3.0
* <small>
* (<b>Internal version:</b> $Revision: $Date: $)
* </small>
* @since OME3.0
*/
public class DataFilter
extends BatchCallTree
{
/** The result of the call. */
private Object result;
/** Loads the specified experimenter groups. */
private BatchCall loadCall;
/** The security context.*/
private SecurityContext ctx;
/**
* Creates a {@link BatchCall} to load the ratings related to the object
* identified by the class and the id.
*
* @param annotationType The type of the object.
* @param nodeType The type of object to filter.
* @param ids The collection of id of the object.
* @param annotated The collection of terms.
* @param userID The id of the user who tagged the object or
* <code>-1</code> if the user is not specified.
* @return The {@link BatchCall}.
*/
private BatchCall filterBy(final Class annotationType, final Class nodeType,
final List<Long> ids, final boolean annotated,
final long userID)
{
return new BatchCall("Filtering annotated data") {
public void doCall() throws Exception
{
OmeroMetadataService os = context.getMetadataService();
result = os.filterByAnnotated(ctx, nodeType, ids,
annotationType, annotated, userID);
}
};
}
/**
* Creates a {@link BatchCall} to load the ratings related to the object
* identified by the class and the id.
*
* @param annotationType The type of the object.
* @param nodeType The type of object to filter.
* @param ids The collection of id of the object.
* @param terms The collection of terms.
* @param userID The id of the user who tagged the object or
* <code>-1</code> if the user is not specified.
* @return The {@link BatchCall}.
*/
private BatchCall filterBy(final Class annotationType, final Class nodeType,
final List<Long> ids, final List<String> terms,
final long userID)
{
return new BatchCall("Filtering annotated data") {
public void doCall() throws Exception
{
OmeroMetadataService os = context.getMetadataService();
result = os.filterByAnnotation(ctx, nodeType, ids,
annotationType, terms, userID);
}
};
}
/**
* Creates a {@link BatchCall} to load the ratings related to the object
* identified by the class and the id.
*
* @param nodeType The type of objects to filter.
* @param ids The collection of object ids.
* @param filter The filtering context.
* @param userID The id of the user or <code>-1</code> if the id
* is not specified.
* @return The {@link BatchCall}.
*/
private BatchCall filterBy(final Class nodeType, final List<Long> ids,
final FilterContext filter, final long userID)
{
return new BatchCall("Filtering annotated data") {
public void doCall() throws Exception
{
OmeroMetadataService os = context.getMetadataService();
result = os.filterByAnnotation(ctx,
nodeType, ids, filter, userID);
}
};
}
/**
* Adds the {@link #loadCall} to the computation tree.
* @see BatchCallTree#buildTree()
*/
protected void buildTree() { add(loadCall); }
/**
* Returns, in a <code>Set</code>, the root nodes of the found trees.
* @see BatchCallTree#getResult()
*/
protected Object getResult() { return result; }
/**
* Creates a new instance. Builds the call corresponding to the passed
* index, throws an {@link IllegalArgumentException} if the index is not
* supported.
*
* @param ctx The security context.
* @param annotationType The type of annotations to fetch.
* @param nodeType The type of objects to filter.
* @param nodeIds The collection of object ids.
* @param annotated Pass <code>true</code> to retrieve the
* annotated nodes, <code>false</code> otherwise.
* @param userID The id of the user or <code>-1</code> if the id
* is not specified.
*/
public DataFilter(SecurityContext ctx, Class annotationType,
Class nodeType, List<Long> nodeIds, boolean annotated, long userID)
{
if (annotationType == null)
throw new IllegalArgumentException("Annotation type not valid.");
if (nodeType == null)
throw new IllegalArgumentException("Node type not valid.");
this.ctx = ctx;
loadCall = filterBy(annotationType, nodeType, nodeIds, annotated,
userID);
}
/**
* Creates a new instance. Builds the call corresponding to the passed
* index, throws an {@link IllegalArgumentException} if the index is not
* supported.
*
* @param ctx The security context.
* @param annotationType The type of annotations to fetch.
* @param nodeType The type of objects to filter.
* @param nodeIds The collection of object ids.
* @param terms The collection of terms.
* @param userID The id of the user or <code>-1</code> if the id
* is not specified.
*/
public DataFilter(SecurityContext ctx, Class annotationType, Class nodeType,
List<Long> nodeIds, List<String> terms, long userID)
{
if (annotationType == null)
throw new IllegalArgumentException("Annotation type not valid.");
if (nodeType == null)
throw new IllegalArgumentException("Node type not valid.");
this.ctx = ctx;
loadCall = filterBy(annotationType, nodeType, nodeIds, terms, userID);
}
/**
* Creates a new instance. Builds the call corresponding to the passed
* index, throws an {@link IllegalArgumentException} if the index is not
* supported.
*
* @param ctx The security context.
* @param nodeType The type of objects to filter.
* @param nodeIds The collection of object ids.
* @param context The filtering context.
* @param userID The id of the user or <code>-1</code> if the id
* is not specified.
*/
public DataFilter(SecurityContext ctx, Class nodeType, List<Long> nodeIds,
FilterContext context, long userID)
{
if (nodeType == null)
throw new IllegalArgumentException("Node type not valid.");
this.ctx = ctx;
loadCall = filterBy(nodeType, nodeIds, context, userID);
}
}