/** * Copyright (C) 2012-2013 Selventa, Inc. * * This file is part of the OpenBEL Framework. * * This program is free software; you can redistribute it and/or modify it * under the terms of the GNU Lesser General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * The OpenBEL Framework is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY * or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public * License for more details. * * You should have received a copy of the GNU Lesser General Public License * along with the OpenBEL Framework. If not, see <http://www.gnu.org/licenses/>. * * Additional Terms under LGPL v3: * * This license does not authorize you and you are prohibited from using the * name, trademarks, service marks, logos or similar indicia of Selventa, Inc., * or, in the discretion of other licensors or authors of the program, the * name, trademarks, service marks, logos or similar indicia of such authors or * licensors, in any marketing or advertising materials relating to your * distribution of the program or any covered product. This restriction does * not waive or limit your obligation to keep intact all copyright notices set * forth in the program as delivered to you. * * If you distribute the program in whole or in part, or any modified version * of the program, and you assume contractual liability to the recipient with * respect to the program or modified version, then you will indemnify the * authors and licensors of the program for any liabilities that these * contractual assumptions directly impose on those licensors and authors. */ package org.openbel.framework.ws.service; import java.util.ArrayList; import java.util.List; import org.openbel.framework.api.BasicPathFinder; import org.openbel.framework.api.Kam; import org.openbel.framework.api.PathFinder; import org.openbel.framework.ws.model.KamNode; import org.openbel.framework.ws.model.SimplePath; import org.openbel.framework.ws.utils.Converter; import org.openbel.framework.ws.utils.Converter.KamStoreObjectRef; import org.openbel.framework.ws.utils.InvalidIdException; import org.springframework.stereotype.Service; @Service public class PathFindServiceImpl implements PathFindService { /** * {@inheritDoc} */ @Override public List<SimplePath> findPaths(final Kam kam, final List<KamNode> sources, final List<KamNode> targets, final int maxSearchDepth) throws PathFindServiceException { final PathFinder pathFinder = new BasicPathFinder(kam); final Kam.KamNode[] sourceKamNodes = convert(kam, sources); final Kam.KamNode[] targetKamNodes = convert(kam, targets); final org.openbel.framework.api.SimplePath[] paths = pathFinder .findPaths(sourceKamNodes, targetKamNodes); final List<SimplePath> wsSimplePaths = new ArrayList<SimplePath>( paths.length); for (final org.openbel.framework.api.SimplePath path : paths) { wsSimplePaths.add(Converter.convert(path, kam.getKamInfo())); } return wsSimplePaths; } /** * {@inheritDoc} */ @Override public List<SimplePath> scan(final Kam kam, List<KamNode> sources, final int maxSearchDepth) throws PathFindServiceException { final PathFinder pathFinder = new BasicPathFinder(kam); final Kam.KamNode[] sourceKamNodes = convert(kam, sources); final org.openbel.framework.api.SimplePath[] paths = pathFinder .scan(sourceKamNodes); final List<SimplePath> wsSimplePaths = new ArrayList<SimplePath>( paths.length); for (final org.openbel.framework.api.SimplePath path : paths) { wsSimplePaths.add(Converter.convert(path, kam.getKamInfo())); } return wsSimplePaths; } /** * {@inheritDoc} */ @Override public List<SimplePath> interconnect(final Kam kam, List<KamNode> sources, final int maxSearchDepth) throws PathFindServiceException { final PathFinder pathFinder = new BasicPathFinder(kam, maxSearchDepth); final Kam.KamNode[] sourceKamNodes = convert(kam, sources); final org.openbel.framework.api.SimplePath[] paths = pathFinder .interconnect(sourceKamNodes); final List<SimplePath> wsSimplePaths = new ArrayList<SimplePath>( paths.length); for (final org.openbel.framework.api.SimplePath path : paths) { wsSimplePaths.add(Converter.convert(path, kam.getKamInfo())); } return wsSimplePaths; } private Kam.KamNode[] convert( final Kam kam, final List<KamNode> wsn) throws PathFindServiceException { final Kam.KamNode[] nodes = new Kam.KamNode[wsn .size()]; for (int i = 0; i < wsn.size(); i++) { final KamNode wsKamNode = wsn.get(i); KamStoreObjectRef kamElementRef; try { kamElementRef = Converter.decodeNode(wsKamNode); } catch (InvalidIdException e) { throw new PathFindServiceException( "Error retreving KAM associated with node", e); } int kamNodeId = kamElementRef.getKamStoreObjectId(); Kam.KamNode kamNode = kam.findNode(kamNodeId); if (kamNode == null) { throw new PathFindServiceException("KamNode with id '" + wsKamNode.getId() + "' does not exist in KAM '" + kam.getKamInfo().getName() + "'."); } nodes[i] = kamNode; } return nodes; } }