/**
* Copyright (C) 2012-2013 Selventa, Inc.
*
* This file is part of the OpenBEL Framework.
*
* This program is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* The OpenBEL Framework is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY
* or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public
* License for more details.
*
* You should have received a copy of the GNU Lesser General Public License
* along with the OpenBEL Framework. If not, see <http://www.gnu.org/licenses/>.
*
* Additional Terms under LGPL v3:
*
* This license does not authorize you and you are prohibited from using the
* name, trademarks, service marks, logos or similar indicia of Selventa, Inc.,
* or, in the discretion of other licensors or authors of the program, the
* name, trademarks, service marks, logos or similar indicia of such authors or
* licensors, in any marketing or advertising materials relating to your
* distribution of the program or any covered product. This restriction does
* not waive or limit your obligation to keep intact all copyright notices set
* forth in the program as delivered to you.
*
* If you distribute the program in whole or in part, or any modified version
* of the program, and you assume contractual liability to the recipient with
* respect to the program or modified version, then you will indemnify the
* authors and licensors of the program for any liabilities that these
* contractual assumptions directly impose on those licensors and authors.
*/
package org.openbel.framework.common.bel.parser;
import org.antlr.runtime.ANTLRStringStream;
import org.antlr.runtime.CharStream;
import org.antlr.runtime.CommonTokenStream;
import org.antlr.runtime.RecognitionException;
import org.antlr.runtime.TokenStream;
public class BELScriptTest {
public static void main(String[] args) throws RecognitionException {
for (String test : "\"Test\", \"Records\", ,,\"Another\"".split("\\,")) {
System.out.println(test.trim());
}
CharStream cstream =
new ANTLRStringStream("SET BodyPart = {\"lung\" , \"liver\"}");
BELScriptLexer lexer = new BELScriptLexer(cstream);
TokenStream tstream = new CommonTokenStream(lexer);
BELScriptParser parser = new BELScriptParser(tstream);
parser.record();
cstream =
new ANTLRStringStream("SET DOCUMENT name = \"Test Document\"");
lexer = new BELScriptLexer(cstream);
tstream = new CommonTokenStream(lexer);
parser = new BELScriptParser(tstream);
parser.record();
cstream = new ANTLRStringStream("SET Species = \"9606\"");
lexer = new BELScriptLexer(cstream);
tstream = new CommonTokenStream(lexer);
parser = new BELScriptParser(tstream);
parser.record();
cstream =
new ANTLRStringStream(
"SET records = {{\"lung\", \"liver\"}, {\"tissue1\", \"tissue2\"}}");
lexer = new BELScriptLexer(cstream);
tstream = new CommonTokenStream(lexer);
parser = new BELScriptParser(tstream);
parser.record();
cstream = new ANTLRStringStream("UNSET species");
lexer = new BELScriptLexer(cstream);
tstream = new CommonTokenStream(lexer);
parser = new BELScriptParser(tstream);
parser.record();
cstream = new ANTLRStringStream("UNSET {species ,tissue ,cell}");
lexer = new BELScriptLexer(cstream);
tstream = new CommonTokenStream(lexer);
parser = new BELScriptParser(tstream);
parser.record();
cstream = new ANTLRStringStream("UNSET ALL");
lexer = new BELScriptLexer(cstream);
tstream = new CommonTokenStream(lexer);
parser = new BELScriptParser(tstream);
parser.record();
cstream =
new ANTLRStringStream(
"DEFINE DEFAULT NAMESPACE EG AS URL \"http://www.entrez-gene.org\"");
lexer = new BELScriptLexer(cstream);
tstream = new CommonTokenStream(lexer);
parser = new BELScriptParser(tstream);
parser.record();
cstream =
new ANTLRStringStream(
"DEFINE ANNOTATION ExposureTime AS PATTERN \"[0-9]+ hours\"");
lexer = new BELScriptLexer(cstream);
tstream = new CommonTokenStream(lexer);
parser = new BELScriptParser(tstream);
parser.record();
cstream =
new ANTLRStringStream(
"DEFINE ANNOTATION Dosage AS LIST {\"low\",\"medium\",\"high\"}");
lexer = new BELScriptLexer(cstream);
tstream = new CommonTokenStream(lexer);
parser = new BELScriptParser(tstream);
parser.record();
cstream = new ANTLRStringStream("# this is a document comment line");
lexer = new BELScriptLexer(cstream);
tstream = new CommonTokenStream(lexer);
parser = new BELScriptParser(tstream);
parser.record();
cstream =
new ANTLRStringStream(
"proteinAbundance(HGNC:AKT1) increases geneAbundance(EG:208) // Extracted from \\\n associated text.");
lexer = new BELScriptLexer(cstream);
tstream = new CommonTokenStream(lexer);
parser = new BELScriptParser(tstream);
parser.statement();
System.out.println("ok");
}
}