/** * Copyright (C) 2012-2013 Selventa, Inc. * * This file is part of the OpenBEL Framework. * * This program is free software; you can redistribute it and/or modify it * under the terms of the GNU Lesser General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * The OpenBEL Framework is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY * or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public * License for more details. * * You should have received a copy of the GNU Lesser General Public License * along with the OpenBEL Framework. If not, see <http://www.gnu.org/licenses/>. * * Additional Terms under LGPL v3: * * This license does not authorize you and you are prohibited from using the * name, trademarks, service marks, logos or similar indicia of Selventa, Inc., * or, in the discretion of other licensors or authors of the program, the * name, trademarks, service marks, logos or similar indicia of such authors or * licensors, in any marketing or advertising materials relating to your * distribution of the program or any covered product. This restriction does * not waive or limit your obligation to keep intact all copyright notices set * forth in the program as delivered to you. * * If you distribute the program in whole or in part, or any modified version * of the program, and you assume contractual liability to the recipient with * respect to the program or modified version, then you will indemnify the * authors and licensors of the program for any liabilities that these * contractual assumptions directly impose on those licensors and authors. */ package org.openbel.framework.common.xbel.converters; import static org.openbel.framework.common.enums.RelationshipType.fromString; import org.openbel.bel.xbel.model.Relationship; import org.openbel.bel.xbel.model.XBELAnnotationGroup; import org.openbel.bel.xbel.model.XBELObject; import org.openbel.bel.xbel.model.XBELStatement; import org.openbel.bel.xbel.model.XBELSubject; import org.openbel.bel.xbel.model.XBELTerm; import org.openbel.framework.common.model.AnnotationGroup; import org.openbel.framework.common.model.Statement; import org.openbel.framework.common.model.Term; import org.openbel.framework.common.model.Statement.Object; /** * Converter class for converting between {@link XBELStatement} and * {@link Statement}. * */ public final class StatementConverter extends JAXBConverter<XBELStatement, Statement> { /** * {@inheritDoc} */ @Override public Statement convert(XBELStatement source) { if (source == null) return null; XBELTerm subject = source.getSubject().getTerm(); TermConverter tConverter = new TermConverter(); // Defer to TermConverter for statement construction Statement dest = new Statement(tConverter.convert(subject)); XBELAnnotationGroup annotationGroup = source.getAnnotationGroup(); AnnotationGroupConverter agConverter = new AnnotationGroupConverter(); // Defer to AnnotationGroupConverter dest.setAnnotationGroup(agConverter.convert(annotationGroup)); String comment = source.getComment(); dest.setComment(comment); // Set statement relationship, if present on source Relationship r = source.getRelationship(); if (r != null) dest.setRelationshipType(fromString(r.value())); XBELObject object = source.getObject(); if (object != null) { if (object.isSetStatement()) { XBELStatement statement = object.getStatement(); StatementConverter sConverter = new StatementConverter(); // Defer to StatementConverter dest.setObject(new Object(sConverter.convert(statement))); } else if (object.isSetTerm()) { XBELTerm term = object.getTerm(); // Defer to TermConverter dest.setObject(new Object(tConverter.convert(term))); } } return dest; } /** * {@inheritDoc} */ @Override public XBELStatement convert(Statement source) { if (source == null) return null; XBELStatement xstmt = new XBELStatement(); Term subject = source.getSubject(); TermConverter tConverter = new TermConverter(); XBELSubject xs = new XBELSubject(); // Defer to TermConverter xs.setTerm(tConverter.convert(subject)); xstmt.setSubject(xs); AnnotationGroup ag = source.getAnnotationGroup(); AnnotationGroupConverter agConverter = new AnnotationGroupConverter(); // Defer to AnnotationGroupConverter xstmt.setAnnotationGroup(agConverter.convert(ag)); String comment = source.getComment(); xstmt.setComment(comment); // Set statement relationship, if present on source org.openbel.framework.common.enums.RelationshipType r = source.getRelationshipType(); if (r != null) xstmt.setRelationship(Relationship.fromValue(r.getDisplayValue())); Object object = source.getObject(); if (object != null) { if (object.getStatement() != null) { XBELObject xo = new XBELObject(); StatementConverter sConverter = new StatementConverter(); // Defer to StatementConverter xo.setStatement(sConverter.convert(object.getStatement())); xstmt.setObject(xo); } else if (object.getTerm() != null) { XBELObject xo = new XBELObject(); // Defer to TermConverter xo.setTerm(tConverter.convert(object.getTerm())); xstmt.setObject(xo); } } return xstmt; } }