/** * Copyright (C) 2012-2013 Selventa, Inc. * * This file is part of the OpenBEL Framework. * * This program is free software; you can redistribute it and/or modify it * under the terms of the GNU Lesser General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * The OpenBEL Framework is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY * or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public * License for more details. * * You should have received a copy of the GNU Lesser General Public License * along with the OpenBEL Framework. If not, see <http://www.gnu.org/licenses/>. * * Additional Terms under LGPL v3: * * This license does not authorize you and you are prohibited from using the * name, trademarks, service marks, logos or similar indicia of Selventa, Inc., * or, in the discretion of other licensors or authors of the program, the * name, trademarks, service marks, logos or similar indicia of such authors or * licensors, in any marketing or advertising materials relating to your * distribution of the program or any covered product. This restriction does * not waive or limit your obligation to keep intact all copyright notices set * forth in the program as delivered to you. * * If you distribute the program in whole or in part, or any modified version * of the program, and you assume contractual liability to the recipient with * respect to the program or modified version, then you will indemnify the * authors and licensors of the program for any liabilities that these * contractual assumptions directly impose on those licensors and authors. */ package org.openbel.framework.common.lang; import org.openbel.framework.common.Strings; /** * Denotes a covalently modified protein abundance. * <p> * Function {@link Signature signature(s)}: * * <pre> * proteinModification()proteinModification * proteinModification(E:phosphorylation)proteinModification * proteinModification(E:phosphorylation,E:phosphorylation)proteinModification * </pre> * * </p> * * @see Signature */ public class ProteinModification extends Function { /** * {@link Strings#PROTEIN_MODIFICATION} */ public final static String NAME; /** * {@link Strings#MODIFICATION_ABBREV} */ public final static String ABBREVIATION; /** * Function description. */ public final static String DESC; static { NAME = Strings.PROTEIN_MODIFICATION; ABBREVIATION = Strings.PROTEIN_MODIFICATION_ABBREV; DESC = "Denotes a covalently modified protein abundance"; } public ProteinModification() { super(NAME, ABBREVIATION, DESC, "proteinModification(E:*)proteinModification", "proteinModification(E:*,E:*)proteinModification", "proteinModification(E:*,E:*,E:*)proteinModification"); } /** * {@inheritDoc} */ @Override public boolean validArgumentCount(int count) { switch (count) { case 1: case 2: case 3: return true; default: return false; } } }