/** * Copyright (C) 2012-2013 Selventa, Inc. * * This file is part of the OpenBEL Framework. * * This program is free software; you can redistribute it and/or modify it * under the terms of the GNU Lesser General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * The OpenBEL Framework is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY * or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public * License for more details. * * You should have received a copy of the GNU Lesser General Public License * along with the OpenBEL Framework. If not, see <http://www.gnu.org/licenses/>. * * Additional Terms under LGPL v3: * * This license does not authorize you and you are prohibited from using the * name, trademarks, service marks, logos or similar indicia of Selventa, Inc., * or, in the discretion of other licensors or authors of the program, the * name, trademarks, service marks, logos or similar indicia of such authors or * licensors, in any marketing or advertising materials relating to your * distribution of the program or any covered product. This restriction does * not waive or limit your obligation to keep intact all copyright notices set * forth in the program as delivered to you. * * If you distribute the program in whole or in part, or any modified version * of the program, and you assume contractual liability to the recipient with * respect to the program or modified version, then you will indemnify the * authors and licensors of the program for any liabilities that these * contractual assumptions directly impose on those licensors and authors. */ package org.openbel.framework.tools.pkam; import java.sql.PreparedStatement; import java.sql.ResultSet; import java.sql.SQLException; import java.sql.Timestamp; import java.sql.Types; import java.util.ArrayList; import java.util.List; import org.openbel.framework.core.df.AbstractJdbcDAO; import org.openbel.framework.core.df.DBConnection; class KAMExportDAO extends AbstractJdbcDAO { KAMExportDAO(final DBConnection dbConnection, final String schemaName) throws SQLException { super(dbConnection, schemaName); } public List<String[]> getAllRowsForTable(final KAMStoreTables1_0 table) throws SQLException { List<String[]> tableRows = new ArrayList<String[]>(); PreparedStatement allRowsPs = getPreparedStatement(table .getSQLSelect(schemaName)); ResultSet allRowsRs = null; try { allRowsRs = allRowsPs.executeQuery(); while (allRowsRs.next()) { tableRows.add(extractData(allRowsRs, table)); } } finally { close(allRowsRs); } return tableRows; } private String[] extractData(final ResultSet allRowsRs, final KAMStoreTables1_0 table) throws SQLException { final String[] cols = table.getColumnNames(); final Integer[] types = table.getColumnTypes(); final String[] data = new String[cols.length]; for (int i = 0; i < cols.length; i++) { final String colName = cols[i]; // store sql timestamps as epoch time to avoid date formats if (types[i] == Types.TIMESTAMP) { Timestamp timeVal = allRowsRs.getTimestamp(colName); if (allRowsRs.wasNull()) { data[i] = null; } else { data[i] = String.valueOf(timeVal.getTime()); } } else if (types[i] == Types.BIGINT) { long l = allRowsRs.getLong(colName); if (allRowsRs.wasNull()) { data[i] = null; } else { data[i] = String.valueOf(l); } } else { final String colValue = allRowsRs.getString(colName); if (allRowsRs.wasNull()) { data[i] = "NULL"; } else { data[i] = colValue; } } } return data; } }