/** * Copyright (C) 2012-2013 Selventa, Inc. * * This file is part of the OpenBEL Framework. * * This program is free software; you can redistribute it and/or modify it * under the terms of the GNU Lesser General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * The OpenBEL Framework is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY * or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public * License for more details. * * You should have received a copy of the GNU Lesser General Public License * along with the OpenBEL Framework. If not, see <http://www.gnu.org/licenses/>. * * Additional Terms under LGPL v3: * * This license does not authorize you and you are prohibited from using the * name, trademarks, service marks, logos or similar indicia of Selventa, Inc., * or, in the discretion of other licensors or authors of the program, the * name, trademarks, service marks, logos or similar indicia of such authors or * licensors, in any marketing or advertising materials relating to your * distribution of the program or any covered product. This restriction does * not waive or limit your obligation to keep intact all copyright notices set * forth in the program as delivered to you. * * If you distribute the program in whole or in part, or any modified version * of the program, and you assume contractual liability to the recipient with * respect to the program or modified version, then you will indemnify the * authors and licensors of the program for any liabilities that these * contractual assumptions directly impose on those licensors and authors. */ package org.openbel.framework.core.compiler.expansion; import java.util.ArrayList; import java.util.List; import org.openbel.framework.common.enums.RelationshipType; import org.openbel.framework.common.model.Statement; /** * For any terms A, B, and C, * * A -> (B -> C) implies B -> C, A -> C * A -| (B -| C) implies B -| C, A -> C * A -> (B -| C) implies B -| C, A -| C * A -| (B -> C) implies B -> C, A -| C */ class DistributeStatementExpansionRule extends ExpansionRule<Statement> { /** * {@inheritDoc} */ @Override public String getName() { return "Distribute nested statement expansion rule"; } /** * {@inheritDoc} */ @Override public boolean match(Statement statement) { // returns true if // - statement is a nested statement // - statement is a non-direct causal // - statement is only nested one level Statement.Object object = statement.getObject(); return statement.hasNestedStatement() && isCausal(statement) && isCausal(object.getStatement()) && object.getStatement().getObject().getTerm() != null; } /** * Determines if the {@link Statement} represents a causal relationship. * * @param statement the {@link Statement} to check for causal relationship * @return <tt>true</tt> if the {@link Statement} represents a causal * relationship, <tt>false</tt> if it does not * * @see RelationshipType#isCausal() */ protected boolean isCausal(Statement statement) { boolean isCausal = false; if (statement.getRelationshipType() != null) { isCausal = statement.getRelationshipType().isCausal(); } return isCausal; } /** * Resolves the relatinoship between A and C, given A parentRelationship (B * childRelationship C) * * @param parentRelationship {@link RelationshipType} the parent * relationship type * @param childRelationship {@link RelationshipType} the child * relationship type * @return {@link RelationshipType} the relationship type to use for the * inferred nested object term */ protected RelationshipType resolveMediatedRelationship( RelationshipType parentRelationship, RelationshipType childRelationship) { if (isIncrease(parentRelationship) == isIncrease(childRelationship)) { // either increase of increase OR decrease or decrease, net increase // in either case return RelationshipType.INCREASES; } return RelationshipType.DECREASES; } /** * Determines if the {@link RelationshipType} represents an increasing * relationship. * * @param relationship the {@link RelationshipType} * @return <tt>true</tt> if the {@link RelationshipType} represents an * increasing relationship, <tt>false</tt> if it does not */ protected boolean isIncrease(RelationshipType relationship) { return relationship == RelationshipType.INCREASES || relationship == RelationshipType.DIRECTLY_INCREASES; } /** * {@inheritDoc} */ @Override public List<Statement> expand(Statement statement) { List<Statement> statements = new ArrayList<Statement>(); // A -> (B -> C) implies B -> C Statement object = statement.getObject().getStatement(); Statement s1 = new Statement(object.getSubject()); s1.setRelationshipType(object.getRelationshipType()); s1.setObject(new Statement.Object(object.getObject().getTerm())); attachExpansionRuleCitation(s1); statements.add(s1); // A -> (B -> C) implies A -> C Statement s2 = new Statement(statement.getSubject()); s2.setRelationshipType(resolveMediatedRelationship( statement.getRelationshipType(), object.getRelationshipType())); s2.setObject(new Statement.Object(object.getObject().getTerm())); attachExpansionRuleCitation(s2); statements.add(s2); return statements; } }