/** * Copyright (C) 2012-2013 Selventa, Inc. * * This file is part of the OpenBEL Framework. * * This program is free software; you can redistribute it and/or modify it * under the terms of the GNU Lesser General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * The OpenBEL Framework is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY * or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public * License for more details. * * You should have received a copy of the GNU Lesser General Public License * along with the OpenBEL Framework. If not, see <http://www.gnu.org/licenses/>. * * Additional Terms under LGPL v3: * * This license does not authorize you and you are prohibited from using the * name, trademarks, service marks, logos or similar indicia of Selventa, Inc., * or, in the discretion of other licensors or authors of the program, the * name, trademarks, service marks, logos or similar indicia of such authors or * licensors, in any marketing or advertising materials relating to your * distribution of the program or any covered product. This restriction does * not waive or limit your obligation to keep intact all copyright notices set * forth in the program as delivered to you. * * If you distribute the program in whole or in part, or any modified version * of the program, and you assume contractual liability to the recipient with * respect to the program or modified version, then you will indemnify the * authors and licensors of the program for any liabilities that these * contractual assumptions directly impose on those licensors and authors. */ package org.openbel.framework.tools.pkam; import java.io.BufferedReader; import java.io.FileInputStream; import java.io.IOException; import java.io.InputStream; import java.io.InputStreamReader; import java.util.zip.GZIPInputStream; /** * PKAMReader provides a {@link BufferedReader} that is created from * a series of other {@link InputStream}s. Data will be processed sequentially * by the following streams:<ol> * <li>{@link FileInputStream} to read file data</li> * <li>{@link GZIPInputStream} to uncompress data</li> * <li>{@link BufferedReader}, <tt>this</tt>, to read data line-by-line.</li></ol> * * @author Anthony Bargnesi {@code <abargnesi@selventa.com>} */ class PKAMReader extends BufferedReader { /** * Construct a PKAMReader from a PKAM stored in <tt>fileName</tt>. * * @param fileName {@link String}, the PKAM file name * @throws IOException Thrown if an IO error occurred establishing the * sequential {@link InputStream}s */ public PKAMReader(final String fileName) throws IOException { super(new InputStreamReader(new GZIPInputStream(new FileInputStream( fileName)))); } }