/** * Copyright (C) 2012-2013 Selventa, Inc. * * This file is part of the OpenBEL Framework. * * This program is free software; you can redistribute it and/or modify it * under the terms of the GNU Lesser General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * The OpenBEL Framework is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY * or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public * License for more details. * * You should have received a copy of the GNU Lesser General Public License * along with the OpenBEL Framework. If not, see <http://www.gnu.org/licenses/>. * * Additional Terms under LGPL v3: * * This license does not authorize you and you are prohibited from using the * name, trademarks, service marks, logos or similar indicia of Selventa, Inc., * or, in the discretion of other licensors or authors of the program, the * name, trademarks, service marks, logos or similar indicia of such authors or * licensors, in any marketing or advertising materials relating to your * distribution of the program or any covered product. This restriction does * not waive or limit your obligation to keep intact all copyright notices set * forth in the program as delivered to you. * * If you distribute the program in whole or in part, or any modified version * of the program, and you assume contractual liability to the recipient with * respect to the program or modified version, then you will indemnify the * authors and licensors of the program for any liabilities that these * contractual assumptions directly impose on those licensors and authors. */ package org.openbel.framework.core.namespace; import static org.openbel.framework.common.BELUtilities.asPath; import static org.openbel.framework.common.PathConstants.NAMESPACE_ROOT_DIRECTORY_NAME; import java.io.File; import org.openbel.framework.common.model.DataFileIndex; import org.openbel.framework.core.df.beldata.namespace.NamespaceHeader; import org.openbel.framework.core.df.beldata.namespace.NamespaceHeaderProcessor; import org.openbel.framework.core.indexer.Indexer; import org.openbel.framework.core.indexer.IndexingFailure; /** * NamespaceIndexerServiceImpl implements a {@link NamespaceIndexerService} * which is responsible for parsing an indexing a BEL namespace document. The * procedure is as follows: * <ul> * <li>Parse the BEL namespace header into a {@link NamespaceHeader} and * maintain the character stop byte offset in the file.</li> * <li>Serialize the {@link NamespaceHeader} to a {@link File}.</li> * <li>Build efficient namespace index by parsing the {@code rawNamespaceFile} * starting from the character stop byte offset.</li> * <li>Create a {@link DataFileIndex} that will encapsulate both the namespace * header and index files.</li> * </ul> * * @author Anthony Bargnesi {@code <abargnesi@selventa.com>} */ public class NamespaceIndexerServiceImpl implements NamespaceIndexerService { /** * Creates a namespace indexer service implementation. */ public NamespaceIndexerServiceImpl() { } /** * {@inheritDoc} */ @Override public DataFileIndex indexNamespace(final String resourceLocation, final File rawNamespaceFile) throws IndexingFailure { final File outputPath = rawNamespaceFile.getParentFile(); final String home = outputPath.getAbsolutePath(); String nsHome = asPath(home, NAMESPACE_ROOT_DIRECTORY_NAME); File nsRoot = new File(nsHome); nsRoot.mkdir(); NamespaceHeaderProcessor proc = new NamespaceHeaderProcessor(); File hdrFile = proc.processNamespaceHeader( resourceLocation, rawNamespaceFile, nsRoot); long characterStopOffset = proc.getCharacterStopOffset(); final String nsVersionPath = hdrFile.getParent(); String nsIdxLoc = asPath(nsVersionPath, "namespace.index"); Indexer namespaceIndexer = new Indexer(); namespaceIndexer.indexNamespaceFile(characterStopOffset, rawNamespaceFile, nsIdxLoc); return new DataFileIndex(resourceLocation, nsIdxLoc, hdrFile); } }