/** * Copyright (C) 2012-2013 Selventa, Inc. * * This file is part of the OpenBEL Framework. * * This program is free software; you can redistribute it and/or modify it * under the terms of the GNU Lesser General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * The OpenBEL Framework is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY * or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public * License for more details. * * You should have received a copy of the GNU Lesser General Public License * along with the OpenBEL Framework. If not, see <http://www.gnu.org/licenses/>. * * Additional Terms under LGPL v3: * * This license does not authorize you and you are prohibited from using the * name, trademarks, service marks, logos or similar indicia of Selventa, Inc., * or, in the discretion of other licensors or authors of the program, the * name, trademarks, service marks, logos or similar indicia of such authors or * licensors, in any marketing or advertising materials relating to your * distribution of the program or any covered product. This restriction does * not waive or limit your obligation to keep intact all copyright notices set * forth in the program as delivered to you. * * If you distribute the program in whole or in part, or any modified version * of the program, and you assume contractual liability to the recipient with * respect to the program or modified version, then you will indemnify the * authors and licensors of the program for any liabilities that these * contractual assumptions directly impose on those licensors and authors. */ package org.openbel.framework.ws.service; import static org.openbel.framework.common.BELUtilities.sizedArrayList; import java.util.List; import java.util.Map; import org.openbel.framework.api.Equivalencer; import org.openbel.framework.api.EquivalencerException; import org.openbel.framework.common.protonetwork.model.SkinnyUUID; import org.openbel.framework.ws.model.EquivalenceId; import org.openbel.framework.ws.model.Namespace; import org.openbel.framework.ws.model.NamespaceValue; import org.openbel.framework.ws.model.ObjectFactory; import org.openbel.framework.ws.utils.ObjectFactorySingleton; import org.springframework.stereotype.Service; /** * Implements an equivalencer service that finds equivalences for namespace values. * * @author Anthony Bargnesi {@code <abargnesi@selventa.com>} */ @Service public class EquivalencerServiceImpl implements EquivalencerService { private static final ObjectFactory OBJECT_FACTORY = ObjectFactorySingleton .getInstance(); private final Equivalencer equivalencer; public EquivalencerServiceImpl() { equivalencer = new Equivalencer(); } public Equivalencer leak() { return equivalencer; } /** * {@inheritDoc} */ @Override public NamespaceValue findNamespaceEquivalence( NamespaceValue sourceNamespaceValue, Namespace targetNamespace) throws EquivalencerException { String equivalenceValue; SkinnyUUID uuid; if (sourceNamespaceValue.getEquivalence() != null) { uuid = convert(sourceNamespaceValue.getEquivalence()); equivalenceValue = equivalencer.equivalence(uuid, convert(targetNamespace)); } else { final Namespace sourceNs = sourceNamespaceValue.getNamespace(); final org.openbel.framework.common.model.Namespace sns = convert(sourceNs); final String sourceValue = sourceNamespaceValue.getValue(); equivalenceValue = equivalencer.equivalence( convert(sourceNs), sourceValue, convert(targetNamespace)); uuid = equivalencer.getUUID(sns, sourceValue); } final NamespaceValue targetNsValue = new NamespaceValue(); targetNsValue.setNamespace(targetNamespace); targetNsValue.setValue(equivalenceValue); // uuid based off of source targetNsValue.setEquivalence(convert(uuid)); return targetNsValue; } /** * {@inheritDoc} */ @Override public List<NamespaceValue> findEquivalences( NamespaceValue sourceNamespaceValue) throws EquivalencerException { Map<org.openbel.framework.common.model.Namespace, String> equivalenceMap; SkinnyUUID uuid; if (sourceNamespaceValue.getEquivalence() != null) { uuid = convert(sourceNamespaceValue.getEquivalence()); equivalenceMap = equivalencer.equivalence(uuid); } else { final Namespace sourceNs = sourceNamespaceValue.getNamespace(); final String sourceValue = sourceNamespaceValue.getValue(); final org.openbel.framework.common.model.Namespace sns = convert(sourceNs); equivalenceMap = equivalencer.equivalence(sns, sourceValue); uuid = equivalencer.getUUID(sns, sourceValue); } EquivalenceId eq = convert(uuid); final List<NamespaceValue> equivalentNsValues = sizedArrayList(equivalenceMap .size()); for (Map.Entry<org.openbel.framework.common.model.Namespace, String> equivalence : equivalenceMap .entrySet()) { final NamespaceValue equivalentNsValue = new NamespaceValue(); equivalentNsValue.setNamespace(convert(equivalence.getKey())); equivalentNsValue.setValue(equivalence.getValue()); equivalentNsValue.setEquivalence(eq); equivalentNsValues.add(equivalentNsValue); } return equivalentNsValues; } /** * {@inheritDoc} */ @Override public EquivalenceId getEquivalenceId(final NamespaceValue nv) throws EquivalencerException { SkinnyUUID uuid = equivalencer.getUUID(convert(nv.getNamespace()), nv.getValue()); return convert(uuid); } private org.openbel.framework.common.model.Namespace convert( final Namespace ns) { final String prefix = ns.getPrefix(); final String resourceLocation = ns.getResourceLocation(); return new org.openbel.framework.common.model.Namespace(prefix, resourceLocation); } private Namespace convert( final org.openbel.framework.common.model.Namespace ns) { final Namespace wsNs = new Namespace(); wsNs.setPrefix(ns.getPrefix()); wsNs.setResourceLocation(ns.getResourceLocation()); return wsNs; } private SkinnyUUID convert(final EquivalenceId equiv) { return new SkinnyUUID(equiv.getMsb(), equiv.getLsb()); } private EquivalenceId convert(final SkinnyUUID uuid) { if (uuid == null) { return null; } EquivalenceId eq = OBJECT_FACTORY.createEquivalenceId(); eq.setMsb(uuid.getMostSignificantBits()); eq.setLsb(uuid.getLeastSignificantBits()); return eq; } }