/** * Copyright (C) 2012-2013 Selventa, Inc. * * This file is part of the OpenBEL Framework. * * This program is free software; you can redistribute it and/or modify it * under the terms of the GNU Lesser General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * The OpenBEL Framework is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY * or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public * License for more details. * * You should have received a copy of the GNU Lesser General Public License * along with the OpenBEL Framework. If not, see <http://www.gnu.org/licenses/>. * * Additional Terms under LGPL v3: * * This license does not authorize you and you are prohibited from using the * name, trademarks, service marks, logos or similar indicia of Selventa, Inc., * or, in the discretion of other licensors or authors of the program, the * name, trademarks, service marks, logos or similar indicia of such authors or * licensors, in any marketing or advertising materials relating to your * distribution of the program or any covered product. This restriction does * not waive or limit your obligation to keep intact all copyright notices set * forth in the program as delivered to you. * * If you distribute the program in whole or in part, or any modified version * of the program, and you assume contractual liability to the recipient with * respect to the program or modified version, then you will indemnify the * authors and licensors of the program for any liabilities that these * contractual assumptions directly impose on those licensors and authors. */ package org.openbel.framework.common.xbel.converters; import static org.openbel.framework.common.BELUtilities.hasItems; import java.util.ArrayList; import java.util.List; import org.openbel.bel.xbel.model.XBELAnnotationGroup; import org.openbel.bel.xbel.model.XBELStatement; import org.openbel.bel.xbel.model.XBELStatementGroup; import org.openbel.framework.common.model.AnnotationGroup; import org.openbel.framework.common.model.Statement; import org.openbel.framework.common.model.StatementGroup; /** * Converter class for converting between {@link XBELStatementGroup} and * {@link StatementGroup}. * */ public final class StatementGroupConverter extends JAXBConverter<XBELStatementGroup, StatementGroup> { /** * {@inheritDoc} */ @Override public StatementGroup convert(XBELStatementGroup source) { if (source == null) return null; // Destination type StatementGroup dest = new StatementGroup(); XBELAnnotationGroup annotationGroup = source.getAnnotationGroup(); AnnotationGroupConverter agConverter = new AnnotationGroupConverter(); // Defer to AnnotationGroupConverter AnnotationGroup ag = agConverter.convert(annotationGroup); dest.setAnnotationGroup(ag); String name = source.getName(); dest.setName(name); String comment = source.getComment(); dest.setComment(comment); List<XBELStatement> xstatements = source.getStatement(); int size = xstatements.size(); List<Statement> statements = new ArrayList<Statement>(size); StatementConverter sConverter = new StatementConverter(); for (final XBELStatement xstmt : xstatements) { // Defer to StatementConverter statements.add(sConverter.convert(xstmt)); } dest.setStatements(statements); List<XBELStatementGroup> xstmtGroup = source.getStatementGroup(); size = xstmtGroup.size(); List<StatementGroup> stmtGroup = new ArrayList<StatementGroup>(size); for (final XBELStatementGroup xsg : xstmtGroup) { stmtGroup.add(convert(xsg)); } dest.setStatementGroups(stmtGroup); return dest; } /** * {@inheritDoc} */ @Override public XBELStatementGroup convert(StatementGroup source) { if (source == null) return null; XBELStatementGroup xsg = new XBELStatementGroup(); AnnotationGroup ag = source.getAnnotationGroup(); AnnotationGroupConverter agConverter = new AnnotationGroupConverter(); // Defer to AnnotationGroupConverter XBELAnnotationGroup xag = agConverter.convert(ag); xsg.setAnnotationGroup(xag); String name = source.getName(); xsg.setName(name); String comment = source.getComment(); xsg.setComment(comment); List<Statement> statements = source.getStatements(); StatementConverter sConverter = new StatementConverter(); if (hasItems(statements)) { List<XBELStatement> xstmts = xsg.getStatement(); for (final Statement stmt : statements) { // Defer to StatementConverter xstmts.add(sConverter.convert(stmt)); } } List<StatementGroup> statementGroups = source.getStatementGroups(); if (hasItems(statementGroups)) { List<XBELStatementGroup> xstmtgroup = xsg.getStatementGroup(); for (final StatementGroup sg : statementGroups) { xstmtgroup.add(convert(sg)); } } return xsg; } }