/** * Copyright (C) 2012-2013 Selventa, Inc. * * This file is part of the OpenBEL Framework. * * This program is free software; you can redistribute it and/or modify it * under the terms of the GNU Lesser General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * The OpenBEL Framework is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY * or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public * License for more details. * * You should have received a copy of the GNU Lesser General Public License * along with the OpenBEL Framework. If not, see <http://www.gnu.org/licenses/>. * * Additional Terms under LGPL v3: * * This license does not authorize you and you are prohibited from using the * name, trademarks, service marks, logos or similar indicia of Selventa, Inc., * or, in the discretion of other licensors or authors of the program, the * name, trademarks, service marks, logos or similar indicia of such authors or * licensors, in any marketing or advertising materials relating to your * distribution of the program or any covered product. This restriction does * not waive or limit your obligation to keep intact all copyright notices set * forth in the program as delivered to you. * * If you distribute the program in whole or in part, or any modified version * of the program, and you assume contractual liability to the recipient with * respect to the program or modified version, then you will indemnify the * authors and licensors of the program for any liabilities that these * contractual assumptions directly impose on those licensors and authors. */ package org.openbel.framework.common.xbel.converters; import static org.openbel.framework.common.enums.AnnotationType.REGULAR_EXPRESSION; import java.util.List; import org.openbel.bel.xbel.model.XBELInternalAnnotationDefinition; import org.openbel.bel.xbel.model.XBELListAnnotation; import org.openbel.framework.common.enums.AnnotationType; import org.openbel.framework.common.model.AnnotationDefinition; /** * Converter class for converting between * {@link XBELInternalAnnotationDefinition} and {@link AnnotationDefinition}. */ public class InternalAnnotationDefinitionConverter extends JAXBConverter<XBELInternalAnnotationDefinition, AnnotationDefinition> { /** * {@inheritDoc} */ @Override public XBELInternalAnnotationDefinition convert(AnnotationDefinition t) { if (t == null || t.getURL() != null) { return null; } XBELInternalAnnotationDefinition dest = new XBELInternalAnnotationDefinition(); String description = t.getDescription(); String id = t.getId(); String usage = t.getUsage(); // If null, set equal to an empty string so that the document can be properly converted. if (description == null) description = ""; if (usage == null) usage = ""; dest.setDescription(description); dest.setId(id); dest.setUsage(usage); AnnotationType type = t.getType(); String value = t.getValue(); switch (type) { case ENUMERATION: List<String> enums = t.getEnums(); XBELListAnnotation xla = new XBELListAnnotation(); List<String> xlaval = xla.getListValue(); xlaval.addAll(enums); dest.setListAnnotation(xla); break; case REGULAR_EXPRESSION: dest.setPatternAnnotation(value); break; default: throw new UnsupportedOperationException("unknown type: " + type); } return dest; } /** * {@inheritDoc} */ @Override public AnnotationDefinition convert(XBELInternalAnnotationDefinition t) { if (t == null) { return null; } String desc = t.getDescription(); String id = t.getId(); String use = t.getUsage(); AnnotationDefinition dest = null; if (t.isSetListAnnotation()) { XBELListAnnotation listAnnotation = t.getListAnnotation(); List<String> vals = listAnnotation.getListValue(); dest = new AnnotationDefinition(id, desc, use, vals); } else if (t.isSetPatternAnnotation()) { String regex = t.getPatternAnnotation(); dest = new AnnotationDefinition(id, REGULAR_EXPRESSION, desc, use); dest.setValue(regex); } else { throw new UnsupportedOperationException("unhandled"); } return dest; } }