/** * Copyright (C) 2012-2013 Selventa, Inc. * * This file is part of the OpenBEL Framework. * * This program is free software; you can redistribute it and/or modify it * under the terms of the GNU Lesser General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * The OpenBEL Framework is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY * or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public * License for more details. * * You should have received a copy of the GNU Lesser General Public License * along with the OpenBEL Framework. If not, see <http://www.gnu.org/licenses/>. * * Additional Terms under LGPL v3: * * This license does not authorize you and you are prohibited from using the * name, trademarks, service marks, logos or similar indicia of Selventa, Inc., * or, in the discretion of other licensors or authors of the program, the * name, trademarks, service marks, logos or similar indicia of such authors or * licensors, in any marketing or advertising materials relating to your * distribution of the program or any covered product. This restriction does * not waive or limit your obligation to keep intact all copyright notices set * forth in the program as delivered to you. * * If you distribute the program in whole or in part, or any modified version * of the program, and you assume contractual liability to the recipient with * respect to the program or modified version, then you will indemnify the * authors and licensors of the program for any liabilities that these * contractual assumptions directly impose on those licensors and authors. */ package org.openbel.framework.core.compiler.expansion; import static java.util.Arrays.asList; import java.util.List; import org.openbel.framework.common.enums.RelationshipType; import org.openbel.framework.common.model.Statement; import org.openbel.framework.common.model.Term; import org.openbel.framework.common.model.Statement.Object; /** * Reciprocal expansion rule. * <p> * <ol> * <li>A analogous B implies B analogous A</li> * <li>A -- B implies B -- A</li> * <li>A negativeCorrelation B implies B negativeCorrelation A</li> * <li>A orthologous B implies B orthologous A</li> * <li>A positiveCorrelation B implies B positiveCorrelation A</li> * </ol> * </p> */ class ReciprocalExpansionRule extends ExpansionRule<Statement> { /** * Returns {@code true} if the statement's {@link Statement#getObject() * object} is non-null and its {@link Statement#getRelationshipType() * relationship} does not match {@link RelationshipType#isDirected()}. */ @Override public boolean match(Statement s) { if (s.getObject() == null) { return false; } if (s.getObject().getTerm() == null) { return false; } final RelationshipType r = s.getRelationshipType(); if (!r.isDirected()) { return true; } return false; } /** * {@inheritDoc} */ @Override public List<Statement> expand(Statement s) { Term sub = s.getSubject(); Term obj = s.getObject().getTerm(); final RelationshipType rel = s.getRelationshipType(); final Statement stmt = new Statement(obj); stmt.setObject(new Object(sub)); stmt.setRelationshipType(rel); return asList(new Statement[] { stmt }); } /** * Returns {@code "Reciprocal relationship expansion rule"}. */ @Override public String getName() { return "Reciprocal relationship expansion rule"; } }