/** * Copyright (C) 2012-2013 Selventa, Inc. * * This file is part of the OpenBEL Framework. * * This program is free software; you can redistribute it and/or modify it * under the terms of the GNU Lesser General Public License as published by * the Free Software Foundation, either version 3 of the License, or * (at your option) any later version. * * The OpenBEL Framework is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY * or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public * License for more details. * * You should have received a copy of the GNU Lesser General Public License * along with the OpenBEL Framework. If not, see <http://www.gnu.org/licenses/>. * * Additional Terms under LGPL v3: * * This license does not authorize you and you are prohibited from using the * name, trademarks, service marks, logos or similar indicia of Selventa, Inc., * or, in the discretion of other licensors or authors of the program, the * name, trademarks, service marks, logos or similar indicia of such authors or * licensors, in any marketing or advertising materials relating to your * distribution of the program or any covered product. This restriction does * not waive or limit your obligation to keep intact all copyright notices set * forth in the program as delivered to you. * * If you distribute the program in whole or in part, or any modified version * of the program, and you assume contractual liability to the recipient with * respect to the program or modified version, then you will indemnify the * authors and licensors of the program for any liabilities that these * contractual assumptions directly impose on those licensors and authors. */ package org.openbel.framework.ws.endpoint; import static java.lang.String.format; import static org.openbel.framework.common.BELUtilities.noLength; import static org.openbel.framework.common.Strings.DIALECT_REQUEST_NO_DIALECT_FOR_HANDLE; import static org.openbel.framework.common.Strings.KAM_REQUEST_NO_KAM_FOR_HANDLE; import java.util.List; import org.openbel.framework.api.Dialect; import org.openbel.framework.api.KamCacheService; import org.openbel.framework.api.KamDialect; import org.openbel.framework.api.Resolver; import org.openbel.framework.ws.core.MissingRequest; import org.openbel.framework.ws.core.RequestException; import org.openbel.framework.ws.model.DialectHandle; import org.openbel.framework.ws.model.Edge; import org.openbel.framework.ws.model.KamEdge; import org.openbel.framework.ws.model.KamHandle; import org.openbel.framework.ws.model.KamNode; import org.openbel.framework.ws.model.Node; import org.openbel.framework.ws.model.ObjectFactory; import org.openbel.framework.ws.model.RelationshipType; import org.openbel.framework.ws.model.ResolveEdgesRequest; import org.openbel.framework.ws.model.ResolveEdgesResponse; import org.openbel.framework.ws.model.ResolveNodesRequest; import org.openbel.framework.ws.model.ResolveNodesResponse; import org.openbel.framework.ws.service.DialectCacheService; import org.openbel.framework.ws.service.ResolverService; import org.openbel.framework.ws.service.ResolverServiceException; import org.openbel.framework.ws.utils.ObjectFactorySingleton; import org.springframework.beans.factory.annotation.Autowired; import org.springframework.ws.server.endpoint.annotation.Endpoint; import org.springframework.ws.server.endpoint.annotation.PayloadRoot; import org.springframework.ws.server.endpoint.annotation.RequestPayload; import org.springframework.ws.server.endpoint.annotation.ResponsePayload; /** * ResolverEndPoint defines a web-service end point to expose the * {@link Resolver} API. * * @author Anthony Bargnesi {@code <abargnesi@selventa.com>} */ @Endpoint public class ResolverEndPoint extends WebServiceEndpoint { private static final String RESOLVE_EDGES_REQUEST = "ResolveEdgesRequest"; private static final String RESOLVE_NODES_REQUEST = "ResolveNodesRequest"; private static final ObjectFactory OBJECT_FACTORY = ObjectFactorySingleton .getInstance(); @Autowired(required = true) private ResolverService resolverService; @Autowired(required = true) private KamCacheService kamCacheService; @Autowired(required = true) private DialectCacheService dialectCacheService; public ResolverEndPoint() { super(); } @PayloadRoot(namespace = NAMESPACE_URI, localPart = RESOLVE_NODES_REQUEST) @ResponsePayload public ResolveNodesResponse resolveKamNodes( @RequestPayload ResolveNodesRequest request) throws RequestException { // validate request if (request == null) { throw new MissingRequest(RESOLVE_NODES_REQUEST); } final KamHandle handle = request.getHandle(); if (handle == null) { throw new RequestException("KamHandle payload is missing"); } // Get the Dialect (may be null) final Dialect dialect = getDialect(request.getDialect()); final org.openbel.framework.api.Kam kam = verifyKam(handle, dialect); final List<Node> nodes = request.getNodes(); if (nodes.isEmpty()) { throw new RequestException("No node to resolve"); } final ResolveNodesResponse response = OBJECT_FACTORY .createResolveNodesResponse(); try { List<KamNode> kamNodes = resolverService.resolveNodes(kam, nodes); for (final KamNode kamNode : kamNodes) { response.getKamNodes().add(kamNode); } return response; } catch (ResolverServiceException e) { final String msg = "error resolving nodes"; throw new RequestException(msg, e); } } @PayloadRoot(namespace = NAMESPACE_URI, localPart = RESOLVE_EDGES_REQUEST) @ResponsePayload public ResolveEdgesResponse resolveKamEdges( @RequestPayload ResolveEdgesRequest request) throws RequestException { // validate request if (request == null) { throw new MissingRequest(RESOLVE_EDGES_REQUEST); } final KamHandle handle = request.getHandle(); if (handle == null) { throw new RequestException("KamHandle payload is missing"); } // Get the Dialect (may be null) final Dialect dialect = getDialect(request.getDialect()); final org.openbel.framework.api.Kam kam = verifyKam(handle, dialect); final List<Edge> edges = request.getEdges(); if (edges.isEmpty()) { throw new RequestException("No edge to resolve"); } // Sanity check the edges (see #83) for (final Edge e : edges) { Node src = e.getSource(), tgt = e.getTarget(); if (src == null || tgt == null) { final String msg = "edge missing source and target nodes"; throw new RequestException(msg); } RelationshipType rel = e.getRelationship(); if (rel == null) { final String msg = "edge missing relationship"; throw new RequestException(msg); } if (noLength(src.getLabel())) { final String msg = "edge source node label is missing"; throw new RequestException(msg); } if (noLength(tgt.getLabel())) { final String msg = "edge target node label is missing"; throw new RequestException(msg); } } final ResolveEdgesResponse response = OBJECT_FACTORY .createResolveEdgesResponse(); try { List<KamEdge> kamEdges = resolverService.resolveEdges(kam, edges); for (final KamEdge kamEdge : kamEdges) { response.getKamEdges().add(kamEdge); } return response; } catch (ResolverServiceException e) { final String msg = "error resolving edges"; throw new RequestException(msg, e); } } private Dialect getDialect(final DialectHandle dialectHandle) throws RequestException { if (dialectHandle == null) { return null; } Dialect dialect = dialectCacheService.getDialect(dialectHandle.getHandle()); if (dialect == null) { final String fmt = DIALECT_REQUEST_NO_DIALECT_FOR_HANDLE; final String msg = format(fmt, dialectHandle.getHandle()); throw new RequestException(msg); } return dialect; } private org.openbel.framework.api.Kam verifyKam(final KamHandle handle, Dialect dialect) throws RequestException { org.openbel.framework.api.Kam kam = null; kam = kamCacheService.getKam(handle.getHandle()); if (kam == null) { final String fmt = KAM_REQUEST_NO_KAM_FOR_HANDLE; final String msg = format(fmt, handle.getHandle()); throw new RequestException(msg); } return dialect == null ? kam : new KamDialect(kam, dialect); } }