package ca.uhn.fhir.rest.server; import static org.hamcrest.Matchers.*; import static org.junit.Assert.*; import java.util.ArrayList; import java.util.Arrays; import java.util.Collections; import java.util.HashSet; import java.util.List; import java.util.Set; import java.util.concurrent.TimeUnit; import org.apache.commons.io.IOUtils; import org.apache.http.HttpResponse; import org.apache.http.client.methods.HttpGet; import org.apache.http.impl.client.CloseableHttpClient; import org.apache.http.impl.client.HttpClientBuilder; import org.apache.http.impl.conn.PoolingHttpClientConnectionManager; import org.eclipse.jetty.server.Server; import org.eclipse.jetty.servlet.ServletHandler; import org.eclipse.jetty.servlet.ServletHolder; import org.hl7.fhir.instance.model.Bundle; import org.hl7.fhir.instance.model.Bundle.SearchEntryMode; import org.hl7.fhir.instance.model.DiagnosticReport; import org.hl7.fhir.instance.model.IdType; import org.hl7.fhir.instance.model.Observation; import org.hl7.fhir.instance.model.Organization; import org.hl7.fhir.instance.model.Patient; import org.hl7.fhir.instance.model.Practitioner; import org.hl7.fhir.instance.model.Reference; import org.junit.AfterClass; import org.junit.BeforeClass; import org.junit.Test; import ca.uhn.fhir.context.FhirContext; import ca.uhn.fhir.model.api.Include; import ca.uhn.fhir.model.api.annotation.Child; import ca.uhn.fhir.model.api.annotation.Extension; import ca.uhn.fhir.model.api.annotation.ResourceDef; import ca.uhn.fhir.model.primitive.StringDt; import ca.uhn.fhir.rest.annotation.IncludeParam; import ca.uhn.fhir.rest.annotation.RequiredParam; import ca.uhn.fhir.rest.annotation.Search; import ca.uhn.fhir.util.ElementUtil; import ca.uhn.fhir.util.PortUtil; public class IncludeHl7OrgDstu2Test { private static CloseableHttpClient ourClient; private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(IncludeHl7OrgDstu2Test.class); private static int ourPort; private static Server ourServer; private static FhirContext ourCtx; @Test public void testNoIncludes() throws Exception { HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?name=Hello"); HttpResponse status = ourClient.execute(httpGet); String responseContent = IOUtils.toString(status.getEntity().getContent()); IOUtils.closeQuietly(status.getEntity().getContent()); assertEquals(200, status.getStatusLine().getStatusCode()); Bundle bundle = ourCtx.newXmlParser().parseResource(Bundle.class, responseContent); assertEquals(1, bundle.getEntry().size()); Patient p = (Patient) bundle.getEntry().get(0).getResource(); assertEquals(0, p.getName().size()); assertEquals("Hello", p.getIdElement().getIdPart()); } @Test public void testOneIncludeXml() throws Exception { HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?name=Hello&_include=foo"); HttpResponse status = ourClient.execute(httpGet); String responseContent = IOUtils.toString(status.getEntity().getContent()); IOUtils.closeQuietly(status.getEntity().getContent()); assertEquals(200, status.getStatusLine().getStatusCode()); ourLog.info(responseContent); Bundle bundle = ourCtx.newXmlParser().parseResource(Bundle.class, responseContent); assertEquals(1, bundle.getEntry().size()); Patient p = (Patient) bundle.getEntry().get(0).getResource(); assertEquals(1, p.getName().size()); assertEquals("Hello", p.getIdElement().getIdPart()); assertEquals("foo", p.getName().get(0).getFamily().get(0).getValue()); } @Test public void testOneIncludeJson() throws Exception { HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?name=Hello&_include=foo&_format=json"); HttpResponse status = ourClient.execute(httpGet); String responseContent = IOUtils.toString(status.getEntity().getContent()); IOUtils.closeQuietly(status.getEntity().getContent()); assertEquals(200, status.getStatusLine().getStatusCode()); ourLog.info(responseContent); Bundle bundle = ourCtx.newJsonParser().parseResource(Bundle.class, responseContent); assertEquals(1, bundle.getEntry().size()); Patient p = (Patient) bundle.getEntry().get(0).getResource(); assertEquals(1, p.getName().size()); assertEquals("Hello", p.getIdElement().getIdPart()); assertEquals("foo", p.getName().get(0).getFamily().get(0).getValue()); } // @Test public void testMixedContainedAndNonContained() throws Exception { HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/DiagnosticReport?_query=stitchedInclude&_pretty=true"); HttpResponse status = ourClient.execute(httpGet); String responseContent = IOUtils.toString(status.getEntity().getContent()); IOUtils.closeQuietly(status.getEntity().getContent()); ourLog.info(responseContent); assertEquals(200, status.getStatusLine().getStatusCode()); Bundle bundle = ourCtx.newXmlParser().parseResource(Bundle.class, responseContent); assertEquals(4, bundle.getEntry().size()); } @Test public void testIIncludedResourcesNonContained() throws Exception { HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?_query=normalInclude&_pretty=true"); HttpResponse status = ourClient.execute(httpGet); String responseContent = IOUtils.toString(status.getEntity().getContent()); IOUtils.closeQuietly(status.getEntity().getContent()); assertEquals(200, status.getStatusLine().getStatusCode()); Bundle bundle = ourCtx.newXmlParser().parseResource(Bundle.class, responseContent); ourLog.info(responseContent); assertEquals(3, bundle.getEntry().size()); assertEquals(new IdType("Patient/p1"), bundle.getEntry().get(0).getResource().getIdElement().toUnqualifiedVersionless()); assertEquals(new IdType("Patient/p2"), bundle.getEntry().get(1).getResource().getIdElement().toUnqualifiedVersionless()); assertEquals(new IdType("Organization/o1"), bundle.getEntry().get(2).getResource().getIdElement().toUnqualifiedVersionless()); assertEquals(SearchEntryMode.INCLUDE, bundle.getEntry().get(2).getSearch().getMode()); Patient p1 = (Patient) bundle.getEntry().get(0).getResource(); assertEquals(0, p1.getContained().size()); Patient p2 = (Patient) bundle.getEntry().get(1).getResource(); assertEquals(0, p2.getContained().size()); } @Test public void testIIncludedResourcesNonContainedInExtension() throws Exception { HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?_query=extInclude&_pretty=true"); HttpResponse status = ourClient.execute(httpGet); String responseContent = IOUtils.toString(status.getEntity().getContent()); IOUtils.closeQuietly(status.getEntity().getContent()); assertEquals(200, status.getStatusLine().getStatusCode()); Bundle bundle = ourCtx.newXmlParser().parseResource(Bundle.class, responseContent); ourLog.info(responseContent); assertEquals(3, bundle.getEntry().size()); assertEquals(new IdType("Patient/p1"), bundle.getEntry().get(0).getResource().getIdElement().toUnqualifiedVersionless()); assertEquals(new IdType("Patient/p2"), bundle.getEntry().get(1).getResource().getIdElement().toUnqualifiedVersionless()); assertEquals(new IdType("Organization/o1"), bundle.getEntry().get(2).getResource().getIdElement().toUnqualifiedVersionless()); assertEquals(SearchEntryMode.INCLUDE, bundle.getEntry().get(2).getSearch().getMode()); Patient p1 = (Patient) bundle.getEntry().get(0).getResource(); assertEquals(0, p1.getContained().size()); Patient p2 = (Patient) bundle.getEntry().get(1).getResource(); assertEquals(0, p2.getContained().size()); } @Test public void testIIncludedResourcesNonContainedInExtensionJson() throws Exception { HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?_query=extInclude&_pretty=true&_format=json"); HttpResponse status = ourClient.execute(httpGet); String responseContent = IOUtils.toString(status.getEntity().getContent()); IOUtils.closeQuietly(status.getEntity().getContent()); assertEquals(200, status.getStatusLine().getStatusCode()); Bundle bundle = ourCtx.newJsonParser().parseResource(Bundle.class, responseContent); ourLog.info(responseContent); assertEquals(3, bundle.getEntry().size()); assertEquals(new IdType("Patient/p1"), bundle.getEntry().get(0).getResource().getIdElement().toUnqualifiedVersionless()); assertEquals(new IdType("Patient/p2"), bundle.getEntry().get(1).getResource().getIdElement().toUnqualifiedVersionless()); assertEquals(new IdType("Organization/o1"), bundle.getEntry().get(2).getResource().getIdElement().toUnqualifiedVersionless()); assertEquals(SearchEntryMode.INCLUDE, bundle.getEntry().get(2).getSearch().getMode()); Patient p1 = (Patient) bundle.getEntry().get(0).getResource(); assertEquals(0, p1.getContained().size()); Patient p2 = (Patient) bundle.getEntry().get(1).getResource(); assertEquals(0, p2.getContained().size()); } @Test public void testIIncludedResourcesNonContainedInDeclaredExtension() throws Exception { HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?_query=declaredExtInclude&_pretty=true"); HttpResponse status = ourClient.execute(httpGet); String responseContent = IOUtils.toString(status.getEntity().getContent()); IOUtils.closeQuietly(status.getEntity().getContent()); assertEquals(200, status.getStatusLine().getStatusCode()); Bundle bundle = ourCtx.newXmlParser().parseResource(Bundle.class, responseContent); ourLog.info(responseContent); assertEquals(4, bundle.getEntry().size()); assertEquals(new IdType("Patient/p1"), bundle.getEntry().get(0).getResource().getIdElement().toUnqualifiedVersionless()); assertEquals(new IdType("Patient/p2"), bundle.getEntry().get(1).getResource().getIdElement().toUnqualifiedVersionless()); assertEquals(new IdType("Organization/o1"), bundle.getEntry().get(2).getResource().getIdElement().toUnqualifiedVersionless()); assertEquals(new IdType("Organization/o2"), bundle.getEntry().get(3).getResource().getIdElement().toUnqualifiedVersionless()); assertEquals(SearchEntryMode.INCLUDE, bundle.getEntry().get(2).getSearch().getMode()); assertEquals(SearchEntryMode.INCLUDE, bundle.getEntry().get(3).getSearch().getMode()); Patient p1 = (Patient) bundle.getEntry().get(0).getResource(); assertEquals(0, p1.getContained().size()); Patient p2 = (Patient) bundle.getEntry().get(1).getResource(); assertEquals(0, p2.getContained().size()); } @Test public void testTwoInclude() throws Exception { HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?name=Hello&_include=foo&_include=bar&_pretty=true"); HttpResponse status = ourClient.execute(httpGet); String responseContent = IOUtils.toString(status.getEntity().getContent()); IOUtils.closeQuietly(status.getEntity().getContent()); ourLog.info(responseContent); assertEquals(200, status.getStatusLine().getStatusCode()); Bundle bundle = ourCtx.newXmlParser().parseResource(Bundle.class, responseContent); assertEquals(1, bundle.getEntry().size()); Patient p = (Patient) bundle.getEntry().get(0).getResource(); assertEquals(2, p.getName().size()); assertEquals("Hello", p.getIdElement().getIdPart()); Set<String> values = new HashSet<String>(); values.add(p.getName().get(0).getFamily().get(0).getValue()); values.add(p.getName().get(1).getFamily().get(0).getValue()); assertThat(values, containsInAnyOrder("foo", "bar")); } @Test public void testBadInclude() throws Exception { HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?name=Hello&_include=foo&_include=baz"); HttpResponse status = ourClient.execute(httpGet); assertEquals(400, status.getStatusLine().getStatusCode()); } @AfterClass public static void afterClass() throws Exception { ourServer.stop(); } @BeforeClass public static void beforeClass() throws Exception { ourCtx = FhirContext.forDstu2Hl7Org(); ourPort = PortUtil.findFreePort(); ourServer = new Server(ourPort); DummyPatientResourceProvider patientProvider = new DummyPatientResourceProvider(); ServletHandler proxyHandler = new ServletHandler(); RestfulServer servlet = new RestfulServer(ourCtx); servlet.setResourceProviders(patientProvider, new DummyDiagnosticReportResourceProvider()); servlet.setBundleInclusionRule(BundleInclusionRule.BASED_ON_RESOURCE_PRESENCE); ServletHolder servletHolder = new ServletHolder(servlet); proxyHandler.addServletWithMapping(servletHolder, "/*"); ourServer.setHandler(proxyHandler); ourServer.start(); PoolingHttpClientConnectionManager connectionManager = new PoolingHttpClientConnectionManager(5000, TimeUnit.MILLISECONDS); HttpClientBuilder builder = HttpClientBuilder.create(); builder.setConnectionManager(connectionManager); ourClient = builder.build(); } @ResourceDef(name = "Patient") public static class ExtPatient extends Patient { private static final long serialVersionUID = 1L; @Child(name = "secondOrg") @Extension(url = "http://foo#secondOrg", definedLocally = false, isModifier = false) private Reference mySecondOrg; @Override public boolean isEmpty() { return super.isEmpty() && ElementUtil.isEmpty(mySecondOrg); } public Reference getSecondOrg() { if (mySecondOrg == null) { mySecondOrg = new Reference(); } return mySecondOrg; } public void setSecondOrg(Reference theSecondOrg) { mySecondOrg = theSecondOrg; } } /** * Created by dsotnikov on 2/25/2014. */ public static class DummyDiagnosticReportResourceProvider implements IResourceProvider { @Override public Class<DiagnosticReport> getResourceType() { return DiagnosticReport.class; } @Search(queryName = "stitchedInclude") public List<DiagnosticReport> stitchedInclude() { Practitioner pr1 = new Practitioner(); pr1.setId("Practitioner/001"); pr1.getName().addFamily("Pract1"); Practitioner pr2 = new Practitioner(); pr2.setId("Practitioner/002"); pr2.getName().addFamily("Pract2"); Practitioner pr3 = new Practitioner(); pr3.setId("Practitioner/003"); pr3.getName().addFamily("Pract3"); Observation o1 = new Observation(); o1.getCode().setText("Obs1"); o1.addPerformer().setResource(pr1); Observation o2 = new Observation(); o2.getCode().setText("Obs2"); o2.addPerformer().setResource(pr2); Observation o3 = new Observation(); o3.getCode().setText("Obs3"); o3.addPerformer().setResource(pr3); DiagnosticReport rep = new DiagnosticReport(); rep.setId("DiagnosticReport/999"); rep.getCode().setText("Rep"); rep.addResult().setResource(o1); rep.addResult().setResource(o2); rep.addResult().setResource(o3); return Collections.singletonList(rep); } } /** * Created by dsotnikov on 2/25/2014. */ public static class DummyPatientResourceProvider implements IResourceProvider { @Search(queryName = "normalInclude") public List<Patient> normalInclude() { Organization o1 = new Organization(); o1.getNameElement().setValue("o1"); o1.setId("o1"); Patient p1 = new Patient(); p1.setId("p1"); p1.addIdentifier().setValue("p1"); p1.getManagingOrganization().setResource(o1); Patient p2 = new Patient(); p2.setId("p2"); p2.addIdentifier().setValue("p2"); p2.getManagingOrganization().setResource(o1); return Arrays.asList(p1, p2); } @Search(queryName = "extInclude") public List<Patient> extInclude() { Organization o1 = new Organization(); o1.getNameElement().setValue("o1"); o1.setId("o1"); Patient p1 = new Patient(); p1.setId("p1"); p1.addIdentifier().setValue("p1"); p1.addExtension().setUrl("http://foo").setValue(new Reference(o1)); Patient p2 = new Patient(); p2.setId("p2"); p2.addIdentifier().setValue("p2"); p2.addExtension().setUrl("http://foo").setValue( new Reference(o1)); return Arrays.asList(p1, p2); } @Search(queryName = "declaredExtInclude") public List<ExtPatient> declaredExtInclude() { Organization o1 = new Organization(); o1.getNameElement().setValue("o1"); o1.setId("o1"); Organization o2 = new Organization(); o2.getNameElement().setValue("o2"); o2.setId("o2"); o1.getPartOf().setResource(o2); ExtPatient p1 = new ExtPatient(); p1.setId("p1"); p1.addIdentifier().setValue("p1"); p1.getSecondOrg().setResource(o1); ExtPatient p2 = new ExtPatient(); p2.setId("p2"); p2.addIdentifier().setValue("p2"); p2.getSecondOrg().setResource(o1); return Arrays.asList(p1, p2); } @Search(queryName = "containedInclude") public List<Patient> containedInclude() { Organization o1 = new Organization(); o1.getNameElement().setValue("o1"); Patient p1 = new Patient(); p1.setId("p1"); p1.addIdentifier().setValue("p1"); p1.getManagingOrganization().setResource(o1); Patient p2 = new Patient(); p2.setId("p2"); p2.addIdentifier().setValue("p2"); p2.getManagingOrganization().setResource(o1); return Arrays.asList(p1, p2); } @Search public List<Patient> findPatient(@RequiredParam(name = Patient.SP_NAME) StringDt theName, @IncludeParam(allow = { "foo", "bar" }) Set<Include> theIncludes) { ArrayList<Patient> retVal = new ArrayList<Patient>(); Patient p = new Patient(); p.addIdentifier().setSystem("foo").setValue("bar"); p.setId(theName.getValue()); if (theIncludes != null) { for (Include next : theIncludes) { p.addName().addFamily(next.getValue()); } } retVal.add(p); return retVal; } @Override public Class<Patient> getResourceType() { return Patient.class; } } }