/*******************************************************************************
* GenPlay, Einstein Genome Analyzer
* Copyright (C) 2009, 2014 Albert Einstein College of Medicine
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
* Authors: Julien Lajugie <julien.lajugie@einstein.yu.edu>
* Nicolas Fourel <nicolas.fourel@einstein.yu.edu>
* Eric Bouhassira <eric.bouhassira@einstein.yu.edu>
*
* Website: <http://genplay.einstein.yu.edu>
******************************************************************************/
package edu.yu.einstein.genplay.gui.track.layer;
/**
* Enumeration of all the different track layers available in GenPlay
* @author Julien Lajugie
*/
public enum LayerType {
/**
* Layer displayed on the background of a track
*/
BACKGROUND_LAYER ("Background Layer"),
/**
* BinList layer
*/
BIN_LAYER ("Fixed Window Layer"),
/**
* Layer displayed on the foreground of a track
*/
FOREGROUND_LAYER ("Foreground Layer"),
/**
* GeneList layer
*/
GENE_LAYER ("Gene Annotation Layer"),
/**
* Mask layer
*/
MASK_LAYER ("Mask Layer"),
/**
* NucleotideList layer
*/
NUCLEOTIDE_LAYER ("DNA Sequence Layer"),
/**
* RepeatFamilyList layer
*/
REPEAT_FAMILY_LAYER ("Repeat Family Layer"),
/**
* Generic ScoredChromosomeWindowList layer
*/
SCW_LAYER ("Variable or Fixed Window Layer (Sequencing/Microarray Data)"),
/**
* Simple SCW layer
*/
SIMPLE_SCW_LAYER ("Variable Window Layer"),
/**
* Variant layer displaying the multigenome information
*/
VARIANT_LAYER ("Variant Layer");
private final String name; // name
/**
* Creates an instance of {@link LayerType}
* @param name name of the layer type
*/
private LayerType(String name) {
this.name = name;
}
/**
* @return the name of the layer type
*/
public String getName() {
return name;
}
/**
* @param layerTypes an array of {@link LayerType}
* @return true if the current object is part of the specified layer types
*/
public boolean isContainedIn(LayerType[] layerTypes) {
for (LayerType currentType: layerTypes) {
if (currentType == this) {
return true;
}
}
return false;
}
@Override
public String toString() {
return getName();
}
}