/*******************************************************************************
* GenPlay, Einstein Genome Analyzer
* Copyright (C) 2009, 2014 Albert Einstein College of Medicine
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program. If not, see <http://www.gnu.org/licenses/>.
* Authors: Julien Lajugie <julien.lajugie@einstein.yu.edu>
* Nicolas Fourel <nicolas.fourel@einstein.yu.edu>
* Eric Bouhassira <eric.bouhassira@einstein.yu.edu>
*
* Website: <http://genplay.einstein.yu.edu>
******************************************************************************/
package edu.yu.einstein.genplay.core.multiGenome.VCF.VCFStatistics;
/**
* @author Nicolas Fourel
* @version 0.1
*/
public interface VCFStatistics {
/**
* @return the array of column names for the data array
*/
public String[] getColumnNamesForData ();
/**
* Processes all statistics
*/
public void processStatistics ();
/**
* @return the data
*/
public Object[][] getData();
/**
* @return the data for display purpose (numbers are local formatted)
*/
public String[][] getDisplayData();
/**
* @param indexLine index of a line
* @return the integer located in the column containing the number, -1 otherwise
*/
int getDataInt (int indexLine);
/**
* Shows all statistics
*/
public void show ();
/**
* @return a String of the {@link VCFFileFullStatistic}
*/
public String getString();
/**
* @return a String of the {@link VCFFileFullStatistic} including its {@link VCFSampleFullStatistic}
*/
public String getFullString ();
}